Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1935 ATGGTAACTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCGTTTATGCTATTCACAGAAAACCTGCCCAAGCTGTGGCCTCTTTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATGCACTTCGTTGTGATTCTCATTCACAGAAACTCTACTTCGATGCACTCAATGGAAGTTCATATCCTATCCTCAAAATCAACGCTTCGAGTCAACGTTTGGTGATCCAACCATCTCCATGGGTTGCTGGCTCTTGTATTACTCAAGACATGTTGGTTAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAATACAATTTTTCTCTTGAACTGTTCTCCTCGCCTGCTGGTTTCGCCACTCAATTGCACTCCTTCAAGTCTCTGTCACCACTACTTGGCAAGTTCAGGACGAGTCGATGAAAAAAAAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGTATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGCTGTAGAGCACTCAGGAGTATCCTCCATCTGGATGTAGAAAAGCCTGCAAACCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTCCTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCATCGGATTGTCTTCCTGCGGGTGGTTCAAACAGTCGTTCTCGTTGCCTTTGTAGAAGGAGCTACTACTGGAATCATATTCTTGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTAGACTGAGCATAAAGCTGTCGGTGTGTCTCGTTTCCTTTTTCATTCTAGCTGCGGTCATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAACAGGAAAAGCTATGTAAAGAAAGAGAGGATATGTTGAATTTAAGCCATGGCGTTAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGAGTCCTAGGCAGTGGTGGCTTTGGAGAGGTTTATAAAGGTGAACTTCAAGATGGGACTATCGTAGCCGTGAAGTCGGCCAAAGTGGGTAATCTAAAGAGCACCGAACAAATACTCAACGAAGTCGGAATACTATCTCAAGTAAATCATAGGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACTGAGCAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGATTCCTTCTTTCTTGGATTGGAGAAAAAGGCTGAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATATCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATTCTTTTAGATGATAAATTCAATGCTAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCAGAATACTATCGAAATTACCAATTAACAGATAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTACTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAAATTGTGTCAATCTAGCGATCTATGTGATCCAAAAAGTGCAAAATGGTGCATTCATTGACGCCATCGATAAACAGCTTATCAGTGATGATCCATCCAGCAATATACTAATCAGTGTGAAGCACTTCTTGGAGCTCGCACTCGCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTTCATGAAGGATGTACTCCAAGAACTTGAATACATAACTCAGATATTGGACAATCCAGAAATAGTTGCTGAAGAAGGTAAGTCTTAA 1917 41.37 MVTMKIPTPCLFGSYLFFLLFFSRLCYSQKTCPSCGLFEVPYPLSTNPNCGDLDYALRCDSHSQKLYFDALNGSSYPILKINASSQRLVIQPSPWVAGSCITQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDEKKAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRALRSILHLDVEKPANQWEEGLEIQWAPPPEPICRTQSDCTGASDCLPAGGSNSRSRCLCRRSYYWNHILGTCLRTNRKSMVRLSIKLSVCLVSFFILAAVIALITVRKSRTFSKQEKLCKEREDMLNLSHGVRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTIVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKIPSFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDKFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDENCVNLAIYVIQKVQNGAFIDAIDKQLISDDPSSNILISVKHFLELALACLREKKVERPFMKDVLQELEYITQILDNPEIVAEEGKS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32948844 32950760 + ClG42_10g0193500.10 Clacu10g1935 260559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1935 638 CDD STKc_IRAK 352 620 - -
Clacu10g1935 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 623 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu10g1935 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247(InterPro)
Clacu10g1935 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1935 638 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Clacu10g1935 638 Gene3D Transferase(Phosphotransferase) domain 1 422 633 - -
Clacu10g1935 638 SUPERFAMILY Protein kinase-like (PK-like) 322 623 IPR011009 -
Clacu10g1935 638 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Clacu10g1935 638 SMART serkin_6 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1935 638 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1935 638 FunFam Wall-associated receptor kinase-like 20 422 631 - -
Clacu10g1935 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 421 - -
Clacu10g1935 638 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0842 Clacu-Chr4:22758112 Clacu10g1935 Clacu-Chr10:32948844 2.40E-152 dispersed
Clacu10g1935 Clacu-Chr10:32948844 Clacu11g2096 Clacu-Chr11:31737545 2.30E-78 dispersed
Clacu10g1935 Clacu-Chr10:32948844 Clacu11g0813 Clacu-Chr11:8049981 1.90E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73908 PF07714 PK_Tyr_Ser-Thr 1.20E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1935 - - - 0.0