Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1963 ATGAAATGGGCCTTGGCCCAAACTTGTCCTTCAAATTTCAGACCGTACAGAACTTTCACTTCGGCGATTCGCTTAGATAAACAGAGAAAGGGGGTTTTAGGTCGCCGGAAGGACGAAGAAGCTTTATCAGTCGGAAATCGGGATCCGGTAAAGAAGCAACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCGGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGGAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGGGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTACGAACAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCGACTCCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGCTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAACGGAACAATGCCATCTGCTGCACCACCAAGGCCATTGCCGCCGCCACCACAAGCTCCACCACCGCCACCACCTCCACCACAGCAAGGAGCACCACCAAGAGTCCCTCCCCCTCCGATGCCTGGGTCCTTGCCACCTCCCCCTTCTGTAATGGCCAATGGTCCTCCTAGGCCAATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCGCCACCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATCGACCTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGACAGCCGCCGCCACCACCACCCAATATGGGCTAG 1203 51.7 MKWALAQTCPSNFRPYRTFTSAIRLDKQRKGVLGRRKDEEALSVGNRDPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTMPSAAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33174509 33177527 - ClG42_10g0196300.10 Clacu10g1963 260587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1963 400 MobiDBLite consensus disorder prediction 372 400 - -
Clacu10g1963 400 PANTHER SPLICING FACTOR 3A SUBUNIT 2 60 397 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Clacu10g1963 400 MobiDBLite consensus disorder prediction 276 361 - -
Clacu10g1963 400 SMART CactinC_cactus_3 148 275 - -
Clacu10g1963 400 MobiDBLite consensus disorder prediction 273 400 - -
Clacu10g1963 400 MobiDBLite consensus disorder prediction 34 80 - -
Clacu10g1963 400 Pfam Zinc-finger of C2H2 type 111 135 IPR013087 -
Clacu10g1963 400 Gene3D - 152 278 - -
Clacu10g1963 400 FunFam Splicing factor 3a subunit 2 153 277 - -
Clacu10g1963 400 ProSiteProfiles Zinc finger matrin-type profile. 111 141 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Clacu10g1963 400 Gene3D Classic Zinc Finger 105 148 - -
Clacu10g1963 400 MobiDBLite consensus disorder prediction 34 61 - -
Clacu10g1963 400 PRINTS Proline rich extensin signature 295 311 - -
Clacu10g1963 400 PRINTS Proline rich extensin signature 274 295 - -
Clacu10g1963 400 PRINTS Proline rich extensin signature 336 361 - -
Clacu10g1963 400 PRINTS Proline rich extensin signature 314 331 - -
Clacu10g1963 400 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 169 263 IPR031781 -
Clacu10g1963 400 SMART ZnF_U1_5 108 142 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu10g1963 400 SUPERFAMILY beta-beta-alpha zinc fingers 107 142 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1963 K12826 - csv:101202831 468.388