Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1976 ATGGCCGCCTCAAATCTCACCTCCGGCAACCCATTCTGGCACCAGTTGTTCTTTGGGCGGTGGTTCTCTGTCTTTGCTTCCTTTCTCATCATGTCCGTCTCCGGCGCCAGCTTCATGTTTGCCCTTTACTCCTCCGACATCAAATCCTCATTAGGCTACGACCAAACCACCCTCAATTTACTCAGCTTCTTCAAGGACTTAGGCAGCAATGTCGGCATCATCAGCGGCCTCATCAACGAGGTCGCTCCGGCCTGGGTGGTTCTTCTAATCGGCGCCGTCATGAACCTTTTTGGCTACACCATGATTTGGCTGGCCGTAACCAATCGGATCCCCAAGCCCCAAATCTGGCATATGTGTCTTTACATTTGCATCGGAGCTAATTCTCAGACCTTTCCAAATACAGGGACTCTTGTAACCTCCGTCATAAATTTCCCGGAAAGTCGTGGTTGTGTTTTGGGGCTTTTGAAGGGATTCGTCGGCTTAAGCGGCGCCATTGTGTCCCAACTTTTCCATGCATTTTATGGCAACAACTCCAAATCTTTTATCCTCTTAATCGCCTGGCTTCCCGCCGCCATCTCTGTTATCTTCCTCCGTTTCATTCGCATCATTAAGGATCTCCGGCAGCCCAACGAGCTCAAAGTTTTTTACCATATCCTTTATATTTCTCTCGGCCTTGCAGGGACCTTAATGGTTTTAATTATTTTGCAAAATCATCTTCGATTTCAACAAATACAATATGTTGGAAGTGTCATTGTTGTGATTGTTCTGCTTTTACTACCTCTAGCCATCGTTTTCAGAGAGGAATATAGTGTTTGGAAGAGTAAAATCAAAAACCCAATTTCACAATTAGAGTTAGCGTCCCAACAACCGCCGCCGTCATTGACTTCAGGGATGCCACCGGCGCCACCGAGCCCTTCGTCGGGCTCCTGCTTTAAAAATACGTTTAAACCCCCAAGTAGAGGAGAGGACTACACGATTCCACAAGCAATTTTTAGCGTCGATATGATAATTCTTTTTATCACCACAATCTGTGGCATCGGTGGAACATTGACGGCGATGGACAACTTGGGCCAAATCGGGGAGTCTTTGGGGTATCCATCTCACAGTACCACCATATTCATCTCTCTAGTGAGCATATGGAATTACCTAGGTCGTGTAGTCTCCGGATTCTTATCGGATTACTTCTGGAAAAAGTACGAACTCCCACGTCCTTTGTTGCTCTTCGCGACGCTTATTCTGTCCTGCGTGGGTCATCTTCTAATCGCATTTGGAGTTCCGAATTCATTGTATTTTTCTTCAATCATATTCGGGTTATGCTTTGGCGCTCAGTGGCCCTTGATCTTAGCAATCATATCGGAAATATTTGGGTTGAAGTACTATGCAACTCTGTGCAATTTGGGAGGAGCGGCAAGCCCGATTGGGGCGTATATTATGAAAGTGAGAGTTGCAGGTCATTTTTACGACAGGGAGGCGGAGCGGCAGATGGTGGCTGCAGGGCAGCGGAGAAAAACAGTGGAGGACTTGAGTTGCTTGGGAGTGGAGTGTTACAGAAAGGCATTTCTTATAATCACAGGGGTGACGCTCTTGGGGGGACTTGTTTCCCTCATTTTGGTGGTTCGGACATGGAAGTTTTATAACACCAATATTTACAACAACTTCAAGGAGGAGGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGATGTCGACATCAAAGTCGTCGCACCTACCGACAATGTGTTGACAACACCAAAAATTGAATCTATTTAG 1770 46.5 MAASNLTSGNPFWHQLFFGRWFSVFASFLIMSVSGASFMFALYSSDIKSSLGYDQTTLNLLSFFKDLGSNVGIISGLINEVAPAWVVLLIGAVMNLFGYTMIWLAVTNRIPKPQIWHMCLYICIGANSQTFPNTGTLVTSVINFPESRGCVLGLLKGFVGLSGAIVSQLFHAFYGNNSKSFILLIAWLPAAISVIFLRFIRIIKDLRQPNELKVFYHILYISLGLAGTLMVLIILQNHLRFQQIQYVGSVIVVIVLLLLPLAIVFREEYSVWKSKIKNPISQLELASQQPPPSLTSGMPPAPPSPSSGSCFKNTFKPPSRGEDYTIPQAIFSVDMIILFITTICGIGGTLTAMDNLGQIGESLGYPSHSTTIFISLVSIWNYLGRVVSGFLSDYFWKKYELPRPLLLFATLILSCVGHLLIAFGVPNSLYFSSIIFGLCFGAQWPLILAIISEIFGLKYYATLCNLGGAASPIGAYIMKVRVAGHFYDREAERQMVAAGQRRKTVEDLSCLGVECYRKAFLIITGVTLLGGLVSLILVVRTWKFYNTNIYNNFKEEEGEGEGEGEGEDVDIKVVAPTDNVLTTPKIESI 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33278980 33280749 + ClG42_10g0197600.10 Clacu10g1976 260600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1976 589 CDD MFS_Mch1p_like 19 530 - -
Clacu10g1976 589 SUPERFAMILY MFS general substrate transporter 222 542 IPR036259 -
Clacu10g1976 589 Gene3D MFS general substrate transporter like domains 329 546 IPR036259 -
Clacu10g1976 589 Pfam Nodulin-like 20 265 IPR010658 -
Clacu10g1976 589 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 20 553 - GO:0016020(PANTHER)
Clacu10g1976 589 SUPERFAMILY MFS general substrate transporter 12 203 IPR036259 -
Clacu10g1976 589 MobiDBLite consensus disorder prediction 286 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0993 Clacu-Chr4:24096053 Clacu10g1976 Clacu-Chr10:33278980 1.40E-196 dispersed
Clacu08g0930 Clacu-Chr8:19443626 Clacu10g1976 Clacu-Chr10:33278980 6.50E-192 dispersed
Clacu10g1976 Clacu-Chr10:33278980 Clacu11g0925 Clacu-Chr11:8935009 1.10E-76 dispersed
Clacu10g1973 Clacu-Chr10:33252910 Clacu10g1976 Clacu-Chr10:33278980 1.30E-279 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1976 - - - 0.0