Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1982 ATGGCGATCACGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAATACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTTGGGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGATCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCGCTTTTATATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCAATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGGTGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATAGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCTGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCCATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGTGCCAAGATGGGAGAGTTGGCCGAGACGGGCACTAAATACTTTTCAAGAGATCTCCTCCGAATCACTAGTATGGCTATCGAAATCATGAGCATCAGCTTGAAGGTTCCAGATCCAAGTGGTAGTGTACCTACATTAATTCACACCCCTTAA 1776 45.1 MAITLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQIQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFGELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGVVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESTLSGATGSLVSGVEAQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPHSSIKEEDVKNFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRREVIAQVRAKMGELAETGTKYFSRDLLRITSMAIEIMSISLKVPDPSGSVPTLIHTP 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33338508 33343843 + ClG42_10g0198200.10 Clacu10g1982 260606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1982 591 Pfam AMP-binding enzyme 39 405 IPR000873 -
Clacu10g1982 591 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - GO:0016405(PANTHER)
Clacu10g1982 591 Gene3D - 13 442 IPR042099 -
Clacu10g1982 591 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Clacu10g1982 591 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
Clacu10g1982 591 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Clacu10g1982 591 Gene3D - 443 546 IPR045851 -
Clacu10g1982 591 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Clacu10g1982 591 CDD 4CL 25 536 - -
Clacu10g1982 591 SUPERFAMILY Acetyl-CoA synthetase-like 17 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0282 Clacu-Chr3:3258102 Clacu10g1982 Clacu-Chr10:33338508 5.20E-193 dispersed
Clacu07g0214 Clacu-Chr7:2498885 Clacu10g1982 Clacu-Chr10:33338508 4.70E-107 dispersed
Clacu10g1982 Clacu-Chr10:33338508 Clacu11g1547 Clacu-Chr11:26579742 2.30E-101 dispersed
Clacu10g1982 Clacu-Chr10:33338508 Clacu11g1447 Clacu-Chr11:25488769 3.80E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1982 K01904 - csv:101204417 992.26