Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1983 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATGACCAACAACCCATCAGCTCCAACAGCGAAAAACACAGACCCTGAAGACCTCAGACCCACAGGAGAGGCTGAAGACGGAACTGGCAGAGCCACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATCGGGTCGGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCATGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGCTTCGTCGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATAGTCGAACAGACAATAGTTCAAATTCGAGTGGTTTTCGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCTGGCAAGAGCACCGTCGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCACGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCCTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTCGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTTGTAGCTGTCTTCCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATTGTCAGACTATTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCCGCCACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTCGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCGCTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGGGAGGATGAGGAGAGAGAGAGCTAG | 4080 | 46.91 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFMTNNPSAPTAKNTDPEDLRPTGEAEDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES | 1359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33363006 | 33368959 | + | ClG42_10g0198300.10 | Clacu10g1983 | 260607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1983 | 1359 | Gene3D | - | 1081 | 1332 | IPR027417 | - | |
| Clacu10g1983 | 1359 | Gene3D | - | 427 | 677 | IPR027417 | - | |
| Clacu10g1983 | 1359 | Pfam | ABC transporter | 1111 | 1259 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 100 | 689 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Clacu10g1983 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 437 | 673 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1328 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 759 | 1074 | - | - | |
| Clacu10g1983 | 1359 | MobiDBLite | consensus disorder prediction | 51 | 85 | - | - | |
| Clacu10g1983 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 415 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Clacu10g1983 | 1359 | ProSitePatterns | ABC transporters family signature. | 576 | 590 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 437 | 676 | - | - | |
| Clacu10g1983 | 1359 | PANTHER | ABC TRANSPORTER B FAMILY | 68 | 701 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Clacu10g1983 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 769 | 1056 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Clacu10g1983 | 1359 | FunFam | ABC transporter B family member 1 | 1082 | 1332 | - | - | |
| Clacu10g1983 | 1359 | FunFam | ABC transporter B family member 1 | 427 | 677 | - | - | |
| Clacu10g1983 | 1359 | Pfam | ABC transporter transmembrane region | 115 | 386 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Clacu10g1983 | 1359 | Pfam | ABC transporter transmembrane region | 771 | 1039 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Clacu10g1983 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 114 | 402 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Clacu10g1983 | 1359 | MobiDBLite | consensus disorder prediction | 1339 | 1359 | - | - | |
| Clacu10g1983 | 1359 | FunFam | ABC transporter B family member 1 | 748 | 1057 | - | - | |
| Clacu10g1983 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1331 | IPR027417 | - | |
| Clacu10g1983 | 1359 | SMART | AAA_5 | 464 | 650 | IPR003593 | GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | SMART | AAA_5 | 1119 | 1311 | IPR003593 | GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 735 | 932 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Clacu10g1983 | 1359 | FunFam | ABC transporter B family member 19 | 1058 | 1080 | - | - | |
| Clacu10g1983 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 113 | 400 | - | - | |
| Clacu10g1983 | 1359 | FunFam | ABC transporter B family member 1 | 100 | 435 | - | - | |
| Clacu10g1983 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 1092 | 1331 | - | - | |
| Clacu10g1983 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 756 | 1078 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Clacu10g1983 | 1359 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
| Clacu10g1983 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 991 | 1335 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Clacu10g1983 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 428 | 676 | IPR027417 | - | |
| Clacu10g1983 | 1359 | Pfam | ABC transporter | 455 | 604 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1983 | 1359 | ProSitePatterns | ABC transporters family signature. | 1231 | 1245 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu09g1902 | Clacu-Chr9:33934171 | Clacu10g1983 | Clacu-Chr10:33363006 | 9.60E-299 | dispersed | |
| Clacu09g2045 | Clacu-Chr9:35272187 | Clacu10g1983 | Clacu-Chr10:33363006 | 2.40E-277 | dispersed | |
| Clacu10g1079 | Clacu-Chr10:22995232 | Clacu10g1983 | Clacu-Chr10:33363006 | 2.10E-50 | dispersed | |
| Clacu10g1983 | Clacu-Chr10:33363006 | Clacu10g1782 | Clacu-Chr10:31428713 | 2.90E-14 | dispersed | |
| Clacu01g0546 | Clacu-Chr1:5485805 | Clacu10g1983 | Clacu-Chr10:33363006 | 6.70E-68 | transposed | |
| Clacu01g2494 | Clacu-Chr1:35346831 | Clacu10g1983 | Clacu-Chr10:33363006 | 1.50E-291 | transposed | |
| Clacu02g0035 | Clacu-Chr2:417750 | Clacu10g1983 | Clacu-Chr10:33363006 | 7.60E-17 | transposed | |
| Clacu04g1226 | Clacu-Chr4:26429196 | Clacu10g1983 | Clacu-Chr10:33363006 | 3.70E-89 | transposed | |
| Clacu05g1713 | Clacu-Chr5:25950197 | Clacu10g1983 | Clacu-Chr10:33363006 | 0.00E+00 | transposed | |
| Clacu09g1176 | Clacu-Chr9:11490378 | Clacu10g1983 | Clacu-Chr10:33363006 | 0.00E+00 | transposed | |
| Clacu09g1874 | Clacu-Chr9:33515401 | Clacu10g1983 | Clacu-Chr10:33363006 | 0.00E+00 | transposed | |
| Clacu10g1866 | Clacu-Chr10:32315751 | Clacu10g1983 | Clacu-Chr10:33363006 | 3.50E-58 | transposed | |
| Clacu11g1270 | Clacu-Chr11:21206027 | Clacu10g1983 | Clacu-Chr10:33363006 | 1.30E-282 | transposed | |
| Clacu11g1514 | Clacu-Chr11:26314762 | Clacu10g1983 | Clacu-Chr10:33363006 | 2.50E-294 | transposed | |
| Clacu10g1983 | Clacu-Chr10:33363006 | Clacu02g2201 | Clacu-Chr2:35138888 | 1.20E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1983 | K05658 | - | csv:101220974 | 2457.94 |