Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2007 ATGGGTAACATTGGTAGTACCGGTTCTAATGGCCGGAGAAGGCACGGTAGTCGCCGGAGTCATCCAACTCCGCCACCACCAGCGCCACCCCAGCCTGAAATTTCAAGTAATCGCTACGTTTTCGCCGCTGCTACGCCTTATCCAACGCAATATCCGAACCATCCGAATCATCCGCCGCCCTACTACCAGTATCCTGGTTACTTCCCACCGCCACCCGGTCCGCCGCCGTCGATGCCGATGCCTTTGCCGGCCCCTTACGATCACCACCACCGCGGAGGTCATCCCCAGATGGATCCCGCGCATTGGGTCGGTGGGAGATACCCTTATGGCCCTCCTATGCCGCCCCAAACTCCCTATGTTGAGCATCAGAAGGCGGTTACCATACGAAATGATGTCAATCTCAAGAAGGAAACTCTTAAGGTCGAGCCTGATGAAGAAAACCCTGGCCAATTCCTTGTATCATTCACGTTTGATGCCACCGTTGCTGGGAGTATCACTGTCTTCTTCTTTGCGAAAGAAGGTGAGGATTGCAACTTGAACCCTGTAAAAGAAGACATTTTTCAACCAGTAACCGTCCATTTCGAACAAGGGCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATTGATTTCTCAAAGCTTGAAGAGTCAGAGTTTCTGAAAGTGAATGACACAGATGTCTATCCATTAGTTGTAAAAGCTGAGGCTTCCACTGATGGCCAAACTGGCCCGGATGGTACTCCGGTACCTGATCCCATGAATTCTCAGATAACCCAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTCAGAGATATGAGCTGCAGGAGATATATGGCATTGGCAATTCAGTTGAGGGCGATGTGGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGTTTGTCAGAGCCGCGGGATACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGTTGTGCTAAGGTGCTGAGGTTCCAGACAAATAGATGCCCGATTTGCAGACAACCCGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAGTAA 1104 50.0 MGNIGSTGSNGRRRHGSRRSHPTPPPPAPPQPEISSNRYVFAAATPYPTQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEENPGQFLVSFTFDATVAGSITVFFFAKEGEDCNLNPVKEDIFQPVTVHFEQGLGQKFRQPSGTGIDFSKLEESEFLKVNDTDVYPLVVKAEASTDGQTGPDGTPVPDPMNSQITQAVFEKDKGEYQVRVLKQILWVNGQRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEE 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33559349 33562104 + ClG42_10g0200700.10 Clacu10g2007 260631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2007 367 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Clacu10g2007 367 MobiDBLite consensus disorder prediction 1 58 - -
Clacu10g2007 367 SUPERFAMILY RING/U-box 310 356 - -
Clacu10g2007 367 FunFam probable E3 ubiquitin-protein ligase LOG2 295 360 - -
Clacu10g2007 367 CDD mRING-HC-C3HC5_MGRN1-like 309 350 IPR045195 -
Clacu10g2007 367 PANTHER MAHOGUNIN 1 363 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Clacu10g2007 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 360 IPR013083 -
Clacu10g2007 367 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Clacu10g2007 367 SMART ring_2 311 349 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g2007 Clacu-Chr10:33559349 Clacu05g0630 Clacu-Chr5:5236426 2.10E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2007 K27504 - csv:101216150 608.601