Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2010 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGAGGATGCTAACCCTAACCCTAACCCTAAACCCAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGATGTGCGTACACCACGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGTGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCAGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCTTCCGCAGCAGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAATAATTCCGTGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCATCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGCTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCACCAACCACTAA 1482 43.99 MSSNPFSLLSSTTTAAFAHQHEDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKMCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSVLFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNANNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFATNH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33578026 33580305 - ClG42_10g0201000.10 Clacu10g2010 260634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2010 493 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Clacu10g2010 493 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Clacu10g2010 493 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 171 210 - -
Clacu10g2010 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Clacu10g2010 493 SMART c2h2final6 145 165 IPR013087 -
Clacu10g2010 493 SMART c2h2final6 68 90 IPR013087 -
Clacu10g2010 493 SMART c2h2final6 110 140 IPR013087 -
Clacu10g2010 493 FunFam protein indeterminate-domain 12-like 47 116 - -
Clacu10g2010 493 MobiDBLite consensus disorder prediction 1 20 - -
Clacu10g2010 493 MobiDBLite consensus disorder prediction 1 52 - -
Clacu10g2010 493 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Clacu10g2010 493 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 144 168 - -
Clacu10g2010 493 Gene3D Classic Zinc Finger 123 202 - -
Clacu10g2010 493 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 106 140 - -
Clacu10g2010 493 Gene3D Classic Zinc Finger 47 121 - -
Clacu10g2010 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 462 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu10g2010 493 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0073 Clacu-Chr9:709407 Clacu10g2010 Clacu-Chr10:33578026 3.80E-87 dispersed
Clacu09g0733 Clacu-Chr9:6411890 Clacu10g2010 Clacu-Chr10:33578026 6.40E-84 dispersed
Clacu03g0232 Clacu-Chr3:2645114 Clacu10g2010 Clacu-Chr10:33578026 1.40E-81 transposed
Clacu11g0221 Clacu-Chr11:1988366 Clacu10g2010 Clacu-Chr10:33578026 1.20E-84 transposed
Clacu10g2010 Clacu-Chr10:33578026 Clacu04g0935 Clacu-Chr4:23612608 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48568 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2010 K25870 - csv:101213422 757.673