Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2013 ATGGCGGCCAAGAACCATTTGAGCTTTATTCTTCTTGTTGTTCTTTTGCAGCTCTTCTATTCAGGAAGGGGGGAATTGCAAATTAATTATTATGCAAAAAGTTGCCCAAAAGCTGAAGAAATTATAAAACAGCAAGTTGTTGATCTCTACTATGAACATGGAAACACTGCCGTTTCTTGGCTCAGAAATCTCTTCCATGATTGCGTTGTTAAGTCTTGCGATGCATCTCTATTATTGGACACAGTGGTGGGAGTGGAATCAGAGAAAGATTCAGACAGAAGTTTTGGGATGAGAAATTTCAAGTACGTAAATAAGATCAAAGCTGCTGTTGAAAAAGAATGTCCTCTCACTGTTTCTTGTGCCGATATTGTTGCATTATCTGCGAGAGATGGCATAGTTATGTTAAAAGGGCCTCGTATAGAGTTGAAAACAGGGAGAAGAGACAGCAAAGTGAGTTATTCAAATCTTGTTGAAGAGTTGGTTCCAAAGCACAATGAATCTCTTCTAAATGTTCTCTCCCGCTTTAACTCCATTGGCATTGATACTGAAGCAACCGTCGCTCTTTTAGGAGCCCACTCAGTAGGACGAGTCCATTGTGTAAACTTAGTGGAGAGATTATATCCAACCATTGATCCAACCATTGATCCAGAATATGCAAAATACTTAAAACTTCGATGCCCGACGCCAAATCCTGATCCAAATGCAGTATTATATTCAAGAAACGACCGTGAAACTCCGATGGTTTTGGATAATATGTACTATACTAATATACTCAAACACAAGGGGTTGCTCATAGTGGATCAAGAATTGGCTTCTAATCCTTTAACTTTACCTTATGTCAAGAAATTTGCTGCCGATAATCTCTATTTTCATGCCCAATTCTCTAGGGGAATTCGTTTGTTGTCTGAGAATAATCCCCTCACTGGAGATCAAGGTGAGATTAGGAAAGATTGTCGCTTTGTTAATTAA 969 38.91 MAAKNHLSFILLVVLLQLFYSGRGELQINYYAKSCPKAEEIIKQQVVDLYYEHGNTAVSWLRNLFHDCVVKSCDASLLLDTVVGVESEKDSDRSFGMRNFKYVNKIKAAVEKECPLTVSCADIVALSARDGIVMLKGPRIELKTGRRDSKVSYSNLVEELVPKHNESLLNVLSRFNSIGIDTEATVALLGAHSVGRVHCVNLVERLYPTIDPTIDPEYAKYLKLRCPTPNPDPNAVLYSRNDRETPMVLDNMYYTNILKHKGLLIVDQELASNPLTLPYVKKFAADNLYFHAQFSRGIRLLSENNPLTGDQGEIRKDCRFVN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33610508 33614696 + ClG42_10g0201300.10 Clacu10g2013 260637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2013 322 FunFam Peroxidase 29 172 - -
Clacu10g2013 322 Pfam Peroxidase 43 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PANTHER - 10 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 FunFam Peroxidase 162 301 - -
Clacu10g2013 322 ProSiteProfiles Plant heme peroxidase family profile. 25 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 CDD secretory_peroxidase 25 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu10g2013 322 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 Gene3D Peroxidase, domain 2 162 301 - -
Clacu10g2013 322 SUPERFAMILY Heme-dependent peroxidases 25 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu10g2013 322 Gene3D - 29 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g2013 Clacu-Chr10:33610508 Clacu07g0875 Clacu-Chr7:21869346 2.30E-55 dispersed
Clacu03g0466 Clacu-Chr3:5022160 Clacu10g2013 Clacu-Chr10:33610508 2.80E-104 transposed
Clacu10g2013 Clacu-Chr10:33610508 Clacu04g0934 Clacu-Chr4:23596353 9.90E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2013 K00430 - csv:101215428 598.201