Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2014 ATGTTGAATTTCTCTCCAATTTCCTCATCCATTACCTTCACATTACTTCTTTTTTCCTTTTCCAATACTGGCATTTTAGATTTCACCGCCACCGTTGCCGCCGTTGAATTTGACTTCGGCACTGTCGCCCTCAGTAGTTTAAAGCTACTCGGCGATGCCCACTTGAACAACGGGAGCGTGAGGCTCACTCGAGACCTTGCCGTCCCAAATTCCGGCTCCGGCAGAGTCCTCTACGCCAAACCCATCAGATTCCGGCAGCCAGGGATTAATTACCTCGCCAGTTTCTCCACATTTTTCTCCTTCTCCGTCACTAATCTCAACCCGTCGTCGATCGGTGGTGGTTTGGCGTTTGTGATATCTCCAGACGCCGAAACGCTCGGCGGAGCTGGTGGGTTGTTGGGGCTGGCCGATGAGAGGGGATTGGGGTTCGTGGCGGTGGAATTCGACACGTTAATGGATGTGGAATTTAAAGACATTAATGGAAACCATGTGGGATTGGATCTGAACGAAATGGTTTCGTTAGAGGTTAAAGATCTTGACGGAATTGGAATGGATCTCAAAAGCGGCGATACCGTTAATTCGTGGATTGAATACGACGGGTTGGCTCGGATCTTCAAAATCTTCGTTTCTTATTCGAATTTGAAACCGACAGAACCTCTAATGTCGTTCAATCTCGATCTTGATCCGTATTTGAACGATTTTATGTACGTTGGATTTTCCGGTTCAACACAGGGGAGTACGGAAGTTCACAGTGTGGACTGGTGGAGCTTTACGTCGTCGTTTGACTCAAATTCACCACCTGGGTCGGTTCCGCCGCCGCCAACGACGACGCTGATGAACCCAACGGCGAATGTCGTTCGTTCACCGCCGCCGTCGCAACCGCCATCGGATTCAGATTCCGTCACGCAAAAGAACTCCAAGTCGACGTCCTGCCACAATGGGCTCTGTAAGCAAGGCGCTGGTGCAGTGGTCGGAGTTGTGACCGCGGGGGCTTTTGTTCTAGCATTATTTGCCGGCGGTTTAATTTGGGTATATTCCAAAAAGATCAAGCGGGTTAAAAAATCGGATTCCCTCGCTTCAGAAATCATCAAAATGCCTAAGGAATTCACATACAAGGAGCTCAAAATCGCTACCAAATGCTTCAATTTGAACAGAATCATCGGCCATGGCGCTTTTGGGACTGTTTATAAAGGGATTCTGCCGGAGACCGGCGACATTGTGGCGGTGAAACGGTGCAGCCATAGTACACAAGGGAAAAATGAATTCCTCTCTGAACTTTCAATCATCGGAACTCTCCGCCACCGGAATTTAGTGCGTCTTCAAGGATGGTGTCACGAGAAAGGCGAAATTTTACTCGTTTACGATTTAATGCCAAATGGAAGTTTAGATAAAGCACTATTCGAAGCTAGAACGCCGCTGCCGTGGCCTCACCGGAGAAAAATCCTTCTAGGCGTCGCCTCTGCTTTGGCTTATTTGCATCAAGAATGTGAAAATCAAGTCATTCATAGAGACGTTAAAACCAGCAATATAATGTTGGATGAAGGATTCAATGCCCGATTAGGCGATTTCGGATTGGCCCGACAAGTGGAGCACGATAAATCGCCGGACGCTACCGTCGCCGCCGGTACAATGGGATACTTAGCGCCGGAATATCTCCTCACAGGACGAGCCACGGAAAAAACCGACGTGTTTAGCTTCGGCGCCGTCGTTCTCGAAGTCGCTAGCGGCAGACGGCCGATCGAAAAAGAGACTGCCGCCGTTGGCGGCGGCGGAAAATTCGGTGTCAACAGTAATTTGGTGGACTGGGTTTGGAGTTTACACCGGGAAGGCCGGTTGTTAACGGCGGCTGATGGGAGACTCGGCGGCGAGTTTGAGGAATCCGAGATGAGGAAAGTTTTGTTAGTTGGGTTAGCTTGTTCTCACCCGGATCCGATGACCCGACCCACGATGAGAGGCGTAGTGCAAATGTTAATCGGCGATGCGGAGATTCCGATCGTCCCTCGGTCTAAGCCGTCAACGAGCTTCAGTACTGCTCATTTGCTTCTCACTTTACAAGACAGCGTGTCCGATCTCAACGGCATGATCGCCATTTCCACTTCCTCGTCCGATCACAGCTTCAAGGGCGAGGATTTAATCTCACTGGATGATCGGACGGCGGGAAATCCATCAATTGTTTGA 2178 49.77 MLNFSPISSSITFTLLLFSFSNTGILDFTATVAAVEFDFGTVALSSLKLLGDAHLNNGSVRLTRDLAVPNSGSGRVLYAKPIRFRQPGINYLASFSTFFSFSVTNLNPSSIGGGLAFVISPDAETLGGAGGLLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSLEVKDLDGIGMDLKSGDTVNSWIEYDGLARIFKIFVSYSNLKPTEPLMSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSVDWWSFTSSFDSNSPPGSVPPPPTTTLMNPTANVVRSPPPSQPPSDSDSVTQKNSKSTSCHNGLCKQGAGAVVGVVTAGAFVLALFAGGLIWVYSKKIKRVKKSDSLASEIIKMPKEFTYKELKIATKCFNLNRIIGHGAFGTVYKGILPETGDIVAVKRCSHSTQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDVKTSNIMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSFGAVVLEVASGRRPIEKETAAVGGGGKFGVNSNLVDWVWSLHREGRLLTAADGRLGGEFEESEMRKVLLVGLACSHPDPMTRPTMRGVVQMLIGDAEIPIVPRSKPSTSFSTAHLLLTLQDSVSDLNGMIAISTSSSDHSFKGEDLISLDDRTAGNPSIV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33622348 33624525 + ClG42_10g0201400.10 Clacu10g2014 260638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2014 725 Gene3D - 32 268 - -
Clacu10g2014 725 SUPERFAMILY Protein kinase-like (PK-like) 363 687 IPR011009 -
Clacu10g2014 725 SMART serkin_6 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2014 725 CDD lectin_legume_LecRK_Arcelin_ConA 35 261 IPR001220 GO:0030246(InterPro)
Clacu10g2014 725 FunFam L-type lectin-domain containing receptor kinase VIII.1 457 675 - -
Clacu10g2014 725 ProSitePatterns Protein kinases ATP-binding region signature. 387 410 IPR017441 GO:0005524(InterPro)
Clacu10g2014 725 Pfam Legume lectin domain 36 264 IPR001220 GO:0030246(InterPro)
Clacu10g2014 725 Gene3D Transferase(Phosphotransferase) domain 1 457 663 - -
Clacu10g2014 725 ProSiteProfiles Protein kinase domain profile. 381 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2014 725 FunFam L-type lectin-domain containing receptor kinase VIII.1 33 270 - -
Clacu10g2014 725 FunFam L-type lectin-domain containing receptor kinase VIII.1 345 456 - -
Clacu10g2014 725 Pfam Protein kinase domain 382 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2014 725 Gene3D Phosphorylase Kinase; domain 1 343 456 - -
Clacu10g2014 725 PANTHER - 39 673 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)
Clacu10g2014 725 MobiDBLite consensus disorder prediction 261 308 - -
Clacu10g2014 725 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 270 IPR013320 -
Clacu10g2014 725 CDD STKc_IRAK 387 657 - -
Clacu10g2014 725 ProSitePatterns Legume lectins beta-chain signature. 144 150 IPR019825 -
Clacu10g2014 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0424 Clacu-Chr10:5314857 Clacu10g2014 Clacu-Chr10:33622348 2.80E-172 dispersed
Clacu10g0831 Clacu-Chr10:15002595 Clacu10g2014 Clacu-Chr10:33622348 3.20E-110 dispersed
Clacu10g1748 Clacu-Chr10:31027407 Clacu10g2014 Clacu-Chr10:33622348 6.70E-97 dispersed
Clacu10g2014 Clacu-Chr10:33622348 Clacu10g2199 Clacu-Chr10:35070479 2.10E-96 dispersed
Clacu10g2014 Clacu-Chr10:33622348 Clacu10g2102 Clacu-Chr10:34303683 2.60E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73909 PF00069 Pkinase 6.20E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2014 - - - 0.0