Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2029 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGTAAGATGTTTGATTTTGGGTGGAAAGCCTTACCTTACCTTAAAGTTACCAAGAGTGACCCCATGGGTATGCAATCCAGCACATTTGCTCTATTTCTTCAAGTCTTAAAGAACGATGATAACATCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTCTCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 837 45.28 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQGKMFDFGWKALPYLKVTKSDPMGMQSSTFALFLQVLKNDDNISGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFLPHKLSYFFIVLLEFRESSVCSAKEG 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33755927 33765296 - ClG42_10g0202900.10 Clacu10g2029 260653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2029 278 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Clacu10g2029 278 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Clacu10g2029 278 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Clacu10g2029 278 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Clacu10g2029 278 MobiDBLite consensus disorder prediction 117 141 - -
Clacu10g2029 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Clacu10g2029 278 SUPERFAMILY Histone-fold 27 134 IPR009072 GO:0046982(InterPro)
Clacu10g2029 278 Gene3D Histone, subunit A 17 163 IPR009072 GO:0046982(InterPro)
Clacu10g2029 278 MobiDBLite consensus disorder prediction 1 28 - -
Clacu10g2029 278 MobiDBLite consensus disorder prediction 117 132 - -
Clacu10g2029 278 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2029 278 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 161 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0948 Clacu-Chr2:12387732 Clacu10g2029 Clacu-Chr10:33755927 1.50E-44 transposed
Clacu03g1738 Clacu-Chr3:31173549 Clacu10g2029 Clacu-Chr10:33755927 1.00E-25 transposed
Clacu07g0930 Clacu-Chr7:23239577 Clacu10g2029 Clacu-Chr10:33755927 3.20E-43 transposed
Clacu09g0607 Clacu-Chr9:5200359 Clacu10g2029 Clacu-Chr10:33755927 1.60E-36 transposed
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g2029 Clacu-Chr10:33755927 2.90E-44 transposed
Clacu10g0427 Clacu-Chr10:5333612 Clacu10g2029 Clacu-Chr10:33755927 1.00E-34 transposed
Clacu10g2029 Clacu-Chr10:33755927 Clacu02g1419 Clacu-Chr2:27523177 3.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48570 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2029 K08065 - csv:101212699 325.479