Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2030 ATGGACGCCAAGCTTCTGCTTCTGCTTCTGCTTCTTCTCTTTCTGTTGGACGTCTCCTTTTCTCAGATGCCAGGTTTTGTGAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATATATGACTTTAAGACACTTTCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGCAACTTCGACAATAACAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCATATCTGACGCCAACACTATCGAGGTTCGAGAGCTCATATTTCTGGCTTCTACTCCTACTGTAAGCGTTTGTTTGTCAAATGCTACAACTGGACAGCCATTCATATCCACACTTGAGCTTCGGCAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCGATAGATGTAGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCCGGAATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTACGAGCCTGGTTTTACCAACTTAACCTTGCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCTGATTTTACTGGATGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGCTACCTTCCTCTTTAGCAAATCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAATAAAAACCTAGTTTTTGACTACTCTAGAAACATTAATCTTCACGAAGGGGGAAAAAAAAACCACGTTTATATCATTGTGGGTTCAATAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTATCTTGCTACTTCTTGCAAAAAGGAAGAAAACGATATCGTGAACAAGATCTACTTGAAGAATCATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTATTGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTATGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTTCAGGGAAGACGAGAATTTGCAAACGAGTTCTATCTTGGAAGAAGATGGAGAATTGGACTCGTGAGTGGATGTGGGAACAGTAGAGAAAGACATACTGCATCGCTACAAGGAAGGAATCAGCTACTGCAACAGCAAGATGAGTCGGACAAATTTAAACACCTCTACACAAAGACAATCCTAGGAAGGCTAAACCAGTCAATCAGGTGTAAAGTGGAAAAGTTGGTTTGGCGGTTCCTTATGGTTAATCACTTGATCAAAGAGGGGAAGATGGAATTGAAGATCCTAAGCTTGACTGGAGATGATTTATTCGGTATAGATAGAAGCACAAGCATCCACGCATTCAATTTATATACACAAGGATATACTGGGTGGCCTGTTAAGTGCAGGGAGAAGGGTAAGCTAATCATTAGAGTAAAACCGTCCAGGAGAATGCTTAATTGGTCCTTGGTCTTCATAAGGGACGAGAGAGGAAGCCAAGAGAGGGATCCAAAAGAACAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAGGATGCTGCTAGAGGGATTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCAAAGGTTTCAGACTTTGGTCTCTCAAAGCTTGCGGTGGATGGTGCCTCCCATGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGACCCAGAGTATTATATCTCTCAGCAGTTAACAGACAAGAGCGATGTATATAGTTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATTGAGAGCGGGGACATTCAAGGGATCATCGATCCGTCGCTGCGCAATGAATATGACATTCAATCAATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTTAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCCATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCATTTGACGAGTCCATTGCTCGACCTACTGCAAGCATAGTGCCTGAGGTTAGGAATAGGGCGGAGCACCATCTTGCTCGTGCGACGGTGTCTTTTGGGAATTTGGGGACTAGTTTTGTAAATCTCTCTTCTTCATTCTTTGAAAAAGTTGGTAGGGATTCTTTTTGTTAG 3309 41.37 MDAKLLLLLLLLLFLLDVSFSQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTLPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSGLLNKNLVFDYSRNINLHEGGKKNHVYIIVGSIIGAVVLLLATVVSCYFLQKGRKRYREQDLLEESSLPVQRFASSKGDAPKETAHCFSVIEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEFYLGRRWRIGLVSGCGNSRERHTASLQGRNQLLQQQDESDKFKHLYTKTILGRLNQSIRCKVEKLVWRFLMVNHLIKEGKMELKILSLTGDDLFGIDRSTSIHAFNLYTQGYTGWPVKCREKGKLIIRVKPSRRMLNWSLVFIRDERGSQERDPKEQDRSMLVYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREATATREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTASIVPEVRNRAEHHLARATVSFGNLGTSFVNLSSSFFEKVGRDSFC 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33772783 33781888 - ClG42_10g0203000.10 Clacu10g2030 260654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2030 1102 Gene3D Ribonuclease Inhibitor 374 520 IPR032675 -
Clacu10g2030 1102 Pfam Protein kinase domain 796 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2030 1102 Pfam Leucine Rich repeats (2 copies) 458 492 IPR025875 -
Clacu10g2030 1102 Gene3D Phosphorylase Kinase; domain 1 571 661 - -
Clacu10g2030 1102 SUPERFAMILY L domain-like 395 502 - -
Clacu10g2030 1102 FunFam Leucine-rich repeat protein kinase family protein 371 521 - -
Clacu10g2030 1102 SUPERFAMILY Protein kinase-like (PK-like) 583 1001 IPR011009 -
Clacu10g2030 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2030 1102 Pfam Malectin-like domain 29 359 IPR024788 -
Clacu10g2030 1102 Gene3D Transferase(Phosphotransferase) domain 1 807 1029 - -
Clacu10g2030 1102 SMART serkin_6 596 1008 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2030 1102 PANTHER OS07G0107800 PROTEIN-RELATED 22 453 - -
Clacu10g2030 1102 ProSiteProfiles Protein kinase domain profile. 596 1008 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2030 1102 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 807 1016 - -
Clacu10g2030 1102 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2821 Clacu-Chr5:35494863 Clacu10g2030 Clacu-Chr10:33772783 1.50E-216 dispersed
Clacu10g2030 Clacu-Chr10:33772783 Clacu11g1854 Clacu-Chr11:29679714 2.60E-82 dispersed
Clacu10g2030 Clacu-Chr10:33772783 Clacu10g2037 Clacu-Chr10:33832738 1.60E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73910 PF12819 Malectin_like 2.30E-77 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2030 - - - 0.0