Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2032 ATGAGTCTGTTTACTGAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCCCCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTAGGTGGTTTCGATACTGCACATGCTGCTGCCAGGGCATATGATCGAGCGGCGATCAAGTTCCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTAACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCGCAGCTCACACGACATCATTGTCGACAGAAGAGCTATGCCAGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCGGCAATCTTCTACTGTAGGAGTTGAGGAGAAAGCACCAGGTGGAAATGAAAGAAGAACACAACCCACAGTTCAATCAAAGGCATTCTTTGTTTCTGAAAGATTATAG 1452 47.18 MSLFTEGGASNPMLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDPRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETNTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHRSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRHHQDSLLLLLHQLSFHQHPLLLVKSISRQSSTVGVEEKAPGGNERRTQPTVQSKAFFVSERL 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33797590 33801088 - ClG42_10g0203200.10 Clacu10g2032 260656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2032 483 Pfam AP2 domain 172 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 Pfam AP2 domain 263 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 ProSiteProfiles AP2/ERF domain profile. 172 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 MobiDBLite consensus disorder prediction 49 74 - -
Clacu10g2032 483 MobiDBLite consensus disorder prediction 146 173 - -
Clacu10g2032 483 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 Gene3D AP2/ERF domain 171 229 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677(InterPro)
Clacu10g2032 483 SMART rav1_2 264 327 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 SMART rav1_2 172 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 ProSiteProfiles AP2/ERF domain profile. 264 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 FunFam AP2-like ethylene-responsive transcription factor 171 230 - -
Clacu10g2032 483 CDD AP2 171 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 SUPERFAMILY DNA-binding domain 263 322 IPR016177 GO:0003677(InterPro)
Clacu10g2032 483 CDD AP2 263 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2032 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 83 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1765 Clacu-Chr1:29813456 Clacu10g2032 Clacu-Chr10:33797590 1.30E-89 dispersed
Clacu02g1262 Clacu-Chr2:25234694 Clacu10g2032 Clacu-Chr10:33797590 6.20E-88 dispersed
Clacu10g2032 Clacu-Chr10:33797590 Clacu11g0957 Clacu-Chr11:10166870 1.60E-39 dispersed
Clacu10g2032 Clacu-Chr10:33797590 Clacu02g2134 Clacu-Chr2:34503275 2.20E-94 wgd
Clacu10g2032 Clacu-Chr10:33797590 Clacu02g1418 Clacu-Chr2:27513474 4.00E-67 wgd
Clacu10g2032 Clacu-Chr10:33797590 Clacu04g0924 Clacu-Chr4:23529133 1.80E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48571 PF00847 AP2 1.30E-09 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2032 K09284 - csv:101211242 748.043