Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2037 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGGATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGGTTAATGGGGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA 1188 42.68 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKVNGGRRYDRNPTKRL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33832738 33835562 + ClG42_10g0203700.10 Clacu10g2037 260661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2037 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2037 395 MobiDBLite consensus disorder prediction 356 372 - -
Clacu10g2037 395 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Clacu10g2037 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Clacu10g2037 395 SMART serkin_6 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2037 395 MobiDBLite consensus disorder prediction 356 395 - -
Clacu10g2037 395 MobiDBLite consensus disorder prediction 31 50 - -
Clacu10g2037 395 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2037 395 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Clacu10g2037 395 MobiDBLite consensus disorder prediction 15 51 - -
Clacu10g2037 395 PANTHER OS07G0668900 PROTEIN 25 360 - -
Clacu10g2037 395 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Clacu10g2037 395 MobiDBLite consensus disorder prediction 373 395 - -
Clacu10g2037 395 CDD STKc_IRAK 77 345 - -
Clacu10g2037 395 FunFam Serine/threonine-protein kinase PBS1 44 147 - -
Clacu10g2037 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2037 395 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0218 Clacu-Chr3:2422582 Clacu10g2037 Clacu-Chr10:33832738 1.20E-144 dispersed
Clacu05g0679 Clacu-Chr5:5690129 Clacu10g2037 Clacu-Chr10:33832738 1.50E-149 dispersed
Clacu06g0187 Clacu-Chr6:2129260 Clacu10g2037 Clacu-Chr10:33832738 9.20E-146 dispersed
Clacu09g0899 Clacu-Chr9:8379528 Clacu10g2037 Clacu-Chr10:33832738 1.40E-130 dispersed
Clacu10g0535 Clacu-Chr10:6437837 Clacu10g2037 Clacu-Chr10:33832738 9.50E-132 dispersed
Clacu10g1148 Clacu-Chr10:24024521 Clacu10g2037 Clacu-Chr10:33832738 4.80E-86 dispersed
Clacu10g2037 Clacu-Chr10:33832738 Clacu11g2056 Clacu-Chr11:31513777 2.90E-124 dispersed
Clacu10g2030 Clacu-Chr10:33772783 Clacu10g2037 Clacu-Chr10:33832738 1.60E-42 proximal
Clacu10g2037 Clacu-Chr10:33832738 Clacu02g2129 Clacu-Chr2:34441134 4.40E-133 wgd
Clacu10g2037 Clacu-Chr10:33832738 Clacu02g1413 Clacu-Chr2:27401668 1.10E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73911 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2037 - - - 0.0