Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2037 | ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGGATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGGTTAATGGGGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA | 1188 | 42.68 | MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKVNGGRRYDRNPTKRL | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33832738 | 33835562 | + | ClG42_10g0203700.10 | Clacu10g2037 | 260661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2037 | 395 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu10g2037 | 395 | MobiDBLite | consensus disorder prediction | 356 | 372 | - | - | |
Clacu10g2037 | 395 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 147 | - | - | |
Clacu10g2037 | 395 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524(InterPro) | |
Clacu10g2037 | 395 | SMART | serkin_6 | 71 | 348 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu10g2037 | 395 | MobiDBLite | consensus disorder prediction | 356 | 395 | - | - | |
Clacu10g2037 | 395 | MobiDBLite | consensus disorder prediction | 31 | 50 | - | - | |
Clacu10g2037 | 395 | Pfam | Protein tyrosine and serine/threonine kinase | 75 | 344 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu10g2037 | 395 | Gene3D | Transferase(Phosphotransferase) domain 1 | 148 | 359 | - | - | |
Clacu10g2037 | 395 | MobiDBLite | consensus disorder prediction | 15 | 51 | - | - | |
Clacu10g2037 | 395 | PANTHER | OS07G0668900 PROTEIN | 25 | 360 | - | - | |
Clacu10g2037 | 395 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 345 | IPR011009 | - | |
Clacu10g2037 | 395 | MobiDBLite | consensus disorder prediction | 373 | 395 | - | - | |
Clacu10g2037 | 395 | CDD | STKc_IRAK | 77 | 345 | - | - | |
Clacu10g2037 | 395 | FunFam | Serine/threonine-protein kinase PBS1 | 44 | 147 | - | - | |
Clacu10g2037 | 395 | ProSiteProfiles | Protein kinase domain profile. | 71 | 348 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu10g2037 | 395 | FunFam | Serine/threonine-protein kinase PBS1 | 148 | 363 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0218 | Clacu-Chr3:2422582 | Clacu10g2037 | Clacu-Chr10:33832738 | 1.20E-144 | dispersed | |
Clacu05g0679 | Clacu-Chr5:5690129 | Clacu10g2037 | Clacu-Chr10:33832738 | 1.50E-149 | dispersed | |
Clacu06g0187 | Clacu-Chr6:2129260 | Clacu10g2037 | Clacu-Chr10:33832738 | 9.20E-146 | dispersed | |
Clacu09g0899 | Clacu-Chr9:8379528 | Clacu10g2037 | Clacu-Chr10:33832738 | 1.40E-130 | dispersed | |
Clacu10g0535 | Clacu-Chr10:6437837 | Clacu10g2037 | Clacu-Chr10:33832738 | 9.50E-132 | dispersed | |
Clacu10g1148 | Clacu-Chr10:24024521 | Clacu10g2037 | Clacu-Chr10:33832738 | 4.80E-86 | dispersed | |
Clacu10g2037 | Clacu-Chr10:33832738 | Clacu11g2056 | Clacu-Chr11:31513777 | 2.90E-124 | dispersed | |
Clacu10g2030 | Clacu-Chr10:33772783 | Clacu10g2037 | Clacu-Chr10:33832738 | 1.60E-42 | proximal | |
Clacu10g2037 | Clacu-Chr10:33832738 | Clacu02g2129 | Clacu-Chr2:34441134 | 4.40E-133 | wgd | |
Clacu10g2037 | Clacu-Chr10:33832738 | Clacu02g1413 | Clacu-Chr2:27401668 | 1.10E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73911 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-46 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2037 | - | - | - | 0.0 |