Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2038 ATGGCTGCTCTCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTCTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGTGCCATCTCTAGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCGAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCATACAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGTGGAGACGATGGGAAAGGAAAGAGGAAGTCGGAGAGGACAGAGAACTAAGGGAGAGAAAAGAAAGAAACGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATAAAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAATGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTACTCCCAGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACGGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAATTACTTGCCTGGATTGAGGGGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAAGTTAAAGAACGAGTGCTGGAGAGGCCGTATATTGCCTTAACGAATAAGCAGTACATCATGTTGACGAGCAATTTTGATGTTTGTACTTCTTATCTCCTTTCTATACCTCCACCCGCTAATGGCGGAGAGGAGCATTCAAATGCTCCACATTCTCGAGCCGAGAAGTATGTTGTTGTCCTTGTTGAGCAAGCGCTTATTGGAGGTAGATTCCAGGTGGGTCGGTATATTGGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCAGTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAAATCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAACGTGTTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGAAATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGCAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCATAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCCGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCAATTGTTTACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCAAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGTTATTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCAGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGATCCGATGTCGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAATCGACGACTATTAAGTGCCAGG 3495 43.4 MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLWRRWERKEEVGEDRELRERKERNVEEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIKLVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYGETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEGFNKIDAYKQTKVDPKVKERVLERPYIALTNKQYIMLTSNFDVCTSYLLSIPPPANGGEEHSNAPHSRAEKYVVVLVEQALIGGRFQVGRYIGDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSVQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSKSDSVDTTDSVPTKLLEPPVETQKRVVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGNHLPLLEEAESLEGTSVANSEEEEACFSGALNHSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDQLFTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPRSPMERKKTAAGSDVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSAR 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33840206 33856550 - ClG42_10g0203800.10 Clacu10g2038 260662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2038 1165 Pfam Glutathione S-transferase, N-terminal domain 280 356 IPR004045 -
Clacu10g2038 1165 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Clacu10g2038 1165 FunFam TBC1 domain family member 8B 904 1044 - -
Clacu10g2038 1165 FunFam Lambda class glutathione S-transferase 104 234 - -
Clacu10g2038 1165 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Clacu10g2038 1165 CDD GST_C_Lambda 111 227 - -
Clacu10g2038 1165 SMART tbc_4 773 997 IPR000195 -
Clacu10g2038 1165 Gene3D - 355 480 - -
Clacu10g2038 1165 Gene3D - 104 234 - -
Clacu10g2038 1165 MobiDBLite consensus disorder prediction 620 641 - -
Clacu10g2038 1165 SUPERFAMILY GST C-terminal domain-like 102 231 IPR036282 -
Clacu10g2038 1165 MobiDBLite consensus disorder prediction 244 259 - -
Clacu10g2038 1165 ProSiteProfiles TBC/rab GAP domain profile. 776 973 IPR000195 -
Clacu10g2038 1165 MobiDBLite consensus disorder prediction 604 650 - -
Clacu10g2038 1165 MobiDBLite consensus disorder prediction 244 268 - -
Clacu10g2038 1165 SFLD Main (cytGST) 28 208 - -
Clacu10g2038 1165 Pfam Rab-GTPase-TBC domain 780 991 IPR000195 -
Clacu10g2038 1165 Gene3D - 904 1043 - -
Clacu10g2038 1165 SUPERFAMILY Thioredoxin-like 271 358 IPR036249 -
Clacu10g2038 1165 Gene3D Glutaredoxin 1 103 - -
Clacu10g2038 1165 Gene3D Glutaredoxin 252 354 - -
Clacu10g2038 1165 MobiDBLite consensus disorder prediction 728 753 - -
Clacu10g2038 1165 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 761 933 IPR035969 -
Clacu10g2038 1165 PANTHER GLUTATHIONE S-TRANSFERASE L1 2 238 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Clacu10g2038 1165 FunFam Glutathione S-transferase L2, chloroplastic 1 103 - -
Clacu10g2038 1165 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 276 357 IPR004045 -
Clacu10g2038 1165 SUPERFAMILY GST C-terminal domain-like 354 471 IPR036282 -
Clacu10g2038 1165 Pfam Glutathione S-transferase, C-terminal domain 396 455 - -
Clacu10g2038 1165 Pfam Glutathione S-transferase, C-terminal domain 146 205 - -
Clacu10g2038 1165 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 910 1025 IPR035969 -
Clacu10g2038 1165 SFLD Glutathione Transferase (cytosolic) 279 456 IPR040079 -
Clacu10g2038 1165 SFLD Glutathione Transferase (cytosolic) 28 208 IPR040079 -
Clacu10g2038 1165 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 793 903 - -
Clacu10g2038 1165 FunFam Glutathione S-transferase L2, chloroplastic 251 354 - -
Clacu10g2038 1165 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 805 903 - -
Clacu10g2038 1165 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g2038 Clacu-Chr10:33840206 Clacu10g2039 Clacu-Chr10:33860214 2.00E-101 tandem
Clacu01g1011 Clacu-Chr1:13537203 Clacu10g2038 Clacu-Chr10:33840206 6.60E-18 transposed
Clacu02g0986 Clacu-Chr2:13885385 Clacu10g2038 Clacu-Chr10:33840206 1.20E-42 transposed
Clacu02g1412 Clacu-Chr2:27371721 Clacu10g2038 Clacu-Chr10:33840206 4.00E-192 transposed
Clacu04g0294 Clacu-Chr4:9726532 Clacu10g2038 Clacu-Chr10:33840206 9.40E-16 transposed
Clacu04g0942 Clacu-Chr4:23665082 Clacu10g2038 Clacu-Chr10:33840206 2.00E-26 transposed
Clacu10g2038 Clacu-Chr10:33840206 Clacu02g1410 Clacu-Chr2:27356312 8.90E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2038 - - - 0.0