Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2038 | ATGGCTGCTCTCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTCTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGTGCCATCTCTAGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCGAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCATACAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGTGGAGACGATGGGAAAGGAAAGAGGAAGTCGGAGAGGACAGAGAACTAAGGGAGAGAAAAGAAAGAAACGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATAAAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAATGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTACTCCCAGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACGGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAATTACTTGCCTGGATTGAGGGGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAAGTTAAAGAACGAGTGCTGGAGAGGCCGTATATTGCCTTAACGAATAAGCAGTACATCATGTTGACGAGCAATTTTGATGTTTGTACTTCTTATCTCCTTTCTATACCTCCACCCGCTAATGGCGGAGAGGAGCATTCAAATGCTCCACATTCTCGAGCCGAGAAGTATGTTGTTGTCCTTGTTGAGCAAGCGCTTATTGGAGGTAGATTCCAGGTGGGTCGGTATATTGGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCAGTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAAATCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAACGTGTTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGAAATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGCAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCATAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCCGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCAATTGTTTACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCAAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGTTATTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCAGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGATCCGATGTCGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAATCGACGACTATTAAGTGCCAGG | 3495 | 43.4 | MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLWRRWERKEEVGEDRELRERKERNVEEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIKLVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYGETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEGFNKIDAYKQTKVDPKVKERVLERPYIALTNKQYIMLTSNFDVCTSYLLSIPPPANGGEEHSNAPHSRAEKYVVVLVEQALIGGRFQVGRYIGDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSVQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSKSDSVDTTDSVPTKLLEPPVETQKRVVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGNHLPLLEEAESLEGTSVANSEEEEACFSGALNHSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDQLFTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPRSPMERKKTAAGSDVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSAR | 1165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33840206 | 33856550 | - | ClG42_10g0203800.10 | Clacu10g2038 | 260662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2038 | 1165 | Pfam | Glutathione S-transferase, N-terminal domain | 280 | 356 | IPR004045 | - | |
Clacu10g2038 | 1165 | Pfam | Glutathione S-transferase, N-terminal domain | 29 | 105 | IPR004045 | - | |
Clacu10g2038 | 1165 | FunFam | TBC1 domain family member 8B | 904 | 1044 | - | - | |
Clacu10g2038 | 1165 | FunFam | Lambda class glutathione S-transferase | 104 | 234 | - | - | |
Clacu10g2038 | 1165 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 25 | 106 | IPR004045 | - | |
Clacu10g2038 | 1165 | CDD | GST_C_Lambda | 111 | 227 | - | - | |
Clacu10g2038 | 1165 | SMART | tbc_4 | 773 | 997 | IPR000195 | - | |
Clacu10g2038 | 1165 | Gene3D | - | 355 | 480 | - | - | |
Clacu10g2038 | 1165 | Gene3D | - | 104 | 234 | - | - | |
Clacu10g2038 | 1165 | MobiDBLite | consensus disorder prediction | 620 | 641 | - | - | |
Clacu10g2038 | 1165 | SUPERFAMILY | GST C-terminal domain-like | 102 | 231 | IPR036282 | - | |
Clacu10g2038 | 1165 | MobiDBLite | consensus disorder prediction | 244 | 259 | - | - | |
Clacu10g2038 | 1165 | ProSiteProfiles | TBC/rab GAP domain profile. | 776 | 973 | IPR000195 | - | |
Clacu10g2038 | 1165 | MobiDBLite | consensus disorder prediction | 604 | 650 | - | - | |
Clacu10g2038 | 1165 | MobiDBLite | consensus disorder prediction | 244 | 268 | - | - | |
Clacu10g2038 | 1165 | SFLD | Main (cytGST) | 28 | 208 | - | - | |
Clacu10g2038 | 1165 | Pfam | Rab-GTPase-TBC domain | 780 | 991 | IPR000195 | - | |
Clacu10g2038 | 1165 | Gene3D | - | 904 | 1043 | - | - | |
Clacu10g2038 | 1165 | SUPERFAMILY | Thioredoxin-like | 271 | 358 | IPR036249 | - | |
Clacu10g2038 | 1165 | Gene3D | Glutaredoxin | 1 | 103 | - | - | |
Clacu10g2038 | 1165 | Gene3D | Glutaredoxin | 252 | 354 | - | - | |
Clacu10g2038 | 1165 | MobiDBLite | consensus disorder prediction | 728 | 753 | - | - | |
Clacu10g2038 | 1165 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 761 | 933 | IPR035969 | - | |
Clacu10g2038 | 1165 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 2 | 238 | IPR044629 | GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER) | |
Clacu10g2038 | 1165 | FunFam | Glutathione S-transferase L2, chloroplastic | 1 | 103 | - | - | |
Clacu10g2038 | 1165 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 276 | 357 | IPR004045 | - | |
Clacu10g2038 | 1165 | SUPERFAMILY | GST C-terminal domain-like | 354 | 471 | IPR036282 | - | |
Clacu10g2038 | 1165 | Pfam | Glutathione S-transferase, C-terminal domain | 396 | 455 | - | - | |
Clacu10g2038 | 1165 | Pfam | Glutathione S-transferase, C-terminal domain | 146 | 205 | - | - | |
Clacu10g2038 | 1165 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 910 | 1025 | IPR035969 | - | |
Clacu10g2038 | 1165 | SFLD | Glutathione Transferase (cytosolic) | 279 | 456 | IPR040079 | - | |
Clacu10g2038 | 1165 | SFLD | Glutathione Transferase (cytosolic) | 28 | 208 | IPR040079 | - | |
Clacu10g2038 | 1165 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 793 | 903 | - | - | |
Clacu10g2038 | 1165 | FunFam | Glutathione S-transferase L2, chloroplastic | 251 | 354 | - | - | |
Clacu10g2038 | 1165 | FunFam | Ypt/Rab-GAP domain of gyp1p superfamily protein | 805 | 903 | - | - | |
Clacu10g2038 | 1165 | SUPERFAMILY | Thioredoxin-like | 20 | 107 | IPR036249 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g2038 | Clacu-Chr10:33840206 | Clacu10g2039 | Clacu-Chr10:33860214 | 2.00E-101 | tandem | |
Clacu01g1011 | Clacu-Chr1:13537203 | Clacu10g2038 | Clacu-Chr10:33840206 | 6.60E-18 | transposed | |
Clacu02g0986 | Clacu-Chr2:13885385 | Clacu10g2038 | Clacu-Chr10:33840206 | 1.20E-42 | transposed | |
Clacu02g1412 | Clacu-Chr2:27371721 | Clacu10g2038 | Clacu-Chr10:33840206 | 4.00E-192 | transposed | |
Clacu04g0294 | Clacu-Chr4:9726532 | Clacu10g2038 | Clacu-Chr10:33840206 | 9.40E-16 | transposed | |
Clacu04g0942 | Clacu-Chr4:23665082 | Clacu10g2038 | Clacu-Chr10:33840206 | 2.00E-26 | transposed | |
Clacu10g2038 | Clacu-Chr10:33840206 | Clacu02g1410 | Clacu-Chr2:27356312 | 8.90E-89 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2038 | - | - | - | 0.0 |