Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2039 ATGGCTACTCCAATTGTCGTATCGGAAGTTCGTCCGCCGTCATTGGAAGCCGACGCCGAACAACCTCCCCTCTTCGACGGAACCACCAGGTTGTATATGGCTTACTATTGCCCATTCGCACAGCGTGCTTGGATTACAAGAAATTACAAGGGATTAGAGGATAAAATTAAATTAGTGCCTCTAAACCTTCAAAACAGGCCTGCTTGGTATAAGGAAAAAGTCTACCCAACAAACAAGGTGCCAGCATTGGAACACAATGGAAAAGTTATTGGAGAAAGCCTTGATTTGATCAAATACATAGATAGCAACTTTGAAGGGCCTTCTCTTTTTCCAGATGATCCTGTTAAAATACAATTTGGTGAAGAGTTGCTAGCTTATACCGATACGTTTACTGGGGCAGTATACCCTTCATTTAAGGGTGACCCAGCTAAGGAAGCAGGTCCTCAATTTGATTACTTGGAGAATGCTCTTCAGAAATTTGATGATGGCCCATTCTTTTTGGGTCAATTCAGTGGGGTGGATATTGCATACATCACATTTATTGAAAGATTCCATGTGTTCTTAAATGAAGTTTTCAAGTATGATATCATAGAAGGAAGACCTAATCTAGCTGCATGGATTGAGGAGTTCAATAAGATTGATGCTTACAAGCAAACAAAATATGATGCTAAAGCGATTGTTGAACTTTACAAAAAGCGCTTCATGGTTTAA 711 40.08 MATPIVVSEVRPPSLEADAEQPPLFDGTTRLYMAYYCPFAQRAWITRNYKGLEDKIKLVPLNLQNRPAWYKEKVYPTNKVPALEHNGKVIGESLDLIKYIDSNFEGPSLFPDDPVKIQFGEELLAYTDTFTGAVYPSFKGDPAKEAGPQFDYLENALQKFDDGPFFLGQFSGVDIAYITFIERFHVFLNEVFKYDIIEGRPNLAAWIEEFNKIDAYKQTKYDAKAIVELYKKRFMV 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33860214 33864163 - ClG42_10g0203900.10 Clacu10g2039 260663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2039 236 PANTHER GLUTATHIONE S-TRANSFERASE L1 6 235 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Clacu10g2039 236 SFLD Main (cytGST) 30 210 - -
Clacu10g2039 236 CDD GST_C_Lambda 113 231 - -
Clacu10g2039 236 Gene3D - 106 236 - -
Clacu10g2039 236 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Clacu10g2039 236 Pfam Glutathione S-transferase, C-terminal domain 150 208 - -
Clacu10g2039 236 FunFam Glutathione S-transferase L2, chloroplastic 2 105 - -
Clacu10g2039 236 FunFam Lambda class glutathione S-transferase 106 236 - -
Clacu10g2039 236 Gene3D Glutaredoxin 2 105 - -
Clacu10g2039 236 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Clacu10g2039 236 SUPERFAMILY Thioredoxin-like 21 109 IPR036249 -
Clacu10g2039 236 SFLD Glutathione Transferase (cytosolic) 30 210 IPR040079 -
Clacu10g2039 236 SUPERFAMILY GST C-terminal domain-like 104 234 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1410 Clacu-Chr2:27356312 Clacu10g2039 Clacu-Chr10:33860214 1.50E-85 dispersed
Clacu04g0294 Clacu-Chr4:9726532 Clacu10g2039 Clacu-Chr10:33860214 1.40E-11 dispersed
Clacu10g2038 Clacu-Chr10:33840206 Clacu10g2039 Clacu-Chr10:33860214 2.00E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2039 K00799 - csv:101210004 448.358