Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2041 ATGGGTGATGATGATAAGGTGATTGGAAATGCTCAGTCTGTTCCTGGAAGATGGCACAGAAGCAAAGGCCAAACCCATAAATCCCAGATTCAAGTGACTGGCCTTTTAGAAAAAATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGCGATTCAAACGGACGAGTTGATGGGTTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCCAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCGTTGAGTATGACCAATCCAGGTCCGCAGGGGACCTTTGTAGGAGTTTATGATGGCCATGGCGGAACCGAAGCTTCACGGTTTGTCAATGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTACACCAAGACATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTAGGGATCATATGCAATGGACAGCTATATATTGCAAATGCAGGCGATTCACGAGTAGTGCTGGGGAGAACTGAGAGAGCCACTAGAGAAGTCATTGCCATTCAATTGTCCACAGAACACAATGCAAGCATAGAGTCTGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATCCTAAAGCACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAATAGACCTCCTCTCCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCGTCAATACTGGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCCCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCAAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGCAGGCCCTCCCCTTGTTCCTTATCAATCAAAGGAGGAGAAGGTCTCCCCTCATCGGCAAACTCCTAG 1227 44.74 MGDDDKVIGNAQSVPGRWHRSKGQTHKSQIQVTGLLEKMVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQDISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIKGGEGLPSSANS 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33869066 33871474 - ClG42_10g0204100.10 Clacu10g2041 260665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2041 408 CDD PP2Cc 70 380 IPR001932 -
Clacu10g2041 408 Gene3D - 61 387 IPR036457 -
Clacu10g2041 408 MobiDBLite consensus disorder prediction 1 26 - -
Clacu10g2041 408 ProSiteProfiles PPM-type phosphatase domain profile. 72 380 IPR001932 -
Clacu10g2041 408 PANTHER PROTEIN PHOSPHATASE 65 379 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu10g2041 408 Pfam Protein phosphatase 2C 102 349 IPR001932 -
Clacu10g2041 408 SUPERFAMILY PP2C-like 71 382 IPR036457 -
Clacu10g2041 408 SMART PP2C_4 50 378 IPR001932 -
Clacu10g2041 408 FunFam Phosphatase 2C family protein 61 389 - -
Clacu10g2041 408 ProSitePatterns PPM-type phosphatase domain signature. 106 114 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0045 Clacu-Chr10:851231 Clacu10g2041 Clacu-Chr10:33869066 5.90E-138 dispersed
Clacu10g0184 Clacu-Chr10:2126272 Clacu10g2041 Clacu-Chr10:33869066 1.20E-26 dispersed
Clacu10g1738 Clacu-Chr10:30914234 Clacu10g2041 Clacu-Chr10:33869066 3.70E-116 dispersed
Clacu10g2041 Clacu-Chr10:33869066 Clacu11g1011 Clacu-Chr11:12123125 1.10E-22 dispersed
Clacu10g2041 Clacu-Chr10:33869066 Clacu02g1409 Clacu-Chr2:27350236 3.50E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2041 K01102 - csv:101210750 738.413