Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2041 | ATGGGTGATGATGATAAGGTGATTGGAAATGCTCAGTCTGTTCCTGGAAGATGGCACAGAAGCAAAGGCCAAACCCATAAATCCCAGATTCAAGTGACTGGCCTTTTAGAAAAAATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGCGATTCAAACGGACGAGTTGATGGGTTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCCAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCGTTGAGTATGACCAATCCAGGTCCGCAGGGGACCTTTGTAGGAGTTTATGATGGCCATGGCGGAACCGAAGCTTCACGGTTTGTCAATGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTACACCAAGACATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTAGGGATCATATGCAATGGACAGCTATATATTGCAAATGCAGGCGATTCACGAGTAGTGCTGGGGAGAACTGAGAGAGCCACTAGAGAAGTCATTGCCATTCAATTGTCCACAGAACACAATGCAAGCATAGAGTCTGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATCCTAAAGCACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAATAGACCTCCTCTCCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCGTCAATACTGGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCCCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCAAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGCAGGCCCTCCCCTTGTTCCTTATCAATCAAAGGAGGAGAAGGTCTCCCCTCATCGGCAAACTCCTAG | 1227 | 44.74 | MGDDDKVIGNAQSVPGRWHRSKGQTHKSQIQVTGLLEKMVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQDISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIKGGEGLPSSANS | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33869066 | 33871474 | - | ClG42_10g0204100.10 | Clacu10g2041 | 260665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2041 | 408 | CDD | PP2Cc | 70 | 380 | IPR001932 | - | |
Clacu10g2041 | 408 | Gene3D | - | 61 | 387 | IPR036457 | - | |
Clacu10g2041 | 408 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Clacu10g2041 | 408 | ProSiteProfiles | PPM-type phosphatase domain profile. | 72 | 380 | IPR001932 | - | |
Clacu10g2041 | 408 | PANTHER | PROTEIN PHOSPHATASE | 65 | 379 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Clacu10g2041 | 408 | Pfam | Protein phosphatase 2C | 102 | 349 | IPR001932 | - | |
Clacu10g2041 | 408 | SUPERFAMILY | PP2C-like | 71 | 382 | IPR036457 | - | |
Clacu10g2041 | 408 | SMART | PP2C_4 | 50 | 378 | IPR001932 | - | |
Clacu10g2041 | 408 | FunFam | Phosphatase 2C family protein | 61 | 389 | - | - | |
Clacu10g2041 | 408 | ProSitePatterns | PPM-type phosphatase domain signature. | 106 | 114 | IPR000222 | GO:0043169(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g0045 | Clacu-Chr10:851231 | Clacu10g2041 | Clacu-Chr10:33869066 | 5.90E-138 | dispersed | |
Clacu10g0184 | Clacu-Chr10:2126272 | Clacu10g2041 | Clacu-Chr10:33869066 | 1.20E-26 | dispersed | |
Clacu10g1738 | Clacu-Chr10:30914234 | Clacu10g2041 | Clacu-Chr10:33869066 | 3.70E-116 | dispersed | |
Clacu10g2041 | Clacu-Chr10:33869066 | Clacu11g1011 | Clacu-Chr11:12123125 | 1.10E-22 | dispersed | |
Clacu10g2041 | Clacu-Chr10:33869066 | Clacu02g1409 | Clacu-Chr2:27350236 | 3.50E-149 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2041 | K01102 | - | csv:101210750 | 738.413 |