Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2043 | ATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACAGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGATGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCTCCTGTGGCGGTGGTGGAGCTGCCGTCAGTGGCGGTGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAACGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACGATGTGTCCATCTGATGGAGATTAA | 855 | 58.6 | MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCPSDGD | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33881145 | 33881999 | - | ClG42_10g0204300.10 | Clacu10g2043 | 260667 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2043 | 284 | SUPERFAMILY | RING/U-box | 204 | 258 | - | - | |
Clacu10g2043 | 284 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 258 | IPR013083 | - | |
Clacu10g2043 | 284 | SMART | ring_2 | 211 | 251 | IPR001841 | - | |
Clacu10g2043 | 284 | Pfam | Ring finger domain | 210 | 252 | IPR001841 | - | |
Clacu10g2043 | 284 | ProSiteProfiles | Zinc finger RING-type profile. | 211 | 252 | IPR001841 | - | |
Clacu10g2043 | 284 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 183 | 257 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Clacu10g2043 | 284 | CDD | RING-H2_PA-TM-RING | 210 | 252 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g2043 | Clacu-Chr10:33881145 | Clacu10g2097 | Clacu-Chr10:34280620 | 2.80E-12 | dispersed | |
Clacu10g2043 | Clacu-Chr10:33881145 | Clacu04g0664 | Clacu-Chr4:20525785 | 5.10E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2043 | - | - | - | 0.0 |