Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2053 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCCAGGTATTCCATCTCGTCGCCGTCCAGAACTCCGGCATCGACTCCACGCCGGAGCTTCAACGACGCGATGATCGAACAGAGCATCGAATCTGCCGCGGCGATTGTGATGAAATGGAATCCAGATTCTTCAACGTACGCCAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTCATTAAGCGTGTGAATGATCTTCAAAAAGCGATGCATCTTATTGCTTCGGAAGATTCCGCTTCCGCTTCCGATCGCCTTGTTTACGCTCAAACTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTTTATCAGATTCTCTCCATGAATCGTGCTCATCTAGATCCGGAATCTGTTTCCACTAGATCCTCTCGCTGCTCCACCAGATCGAGCACTTCCGTTGATTTCGACGATGACGGAACCCTAGACGATGAAATCCAAGCCATAGACGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTCATTGTAATGGAGGATTTACGAGCCATAGCCGAGTGTATGATCTCCTCTGGCTACGCTAAAGAATGCGTTAATATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGCCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAACAAAATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTCGCAATTAGAACGTTGTTCGTTGGCGAACGAATTCTCTGTGATCACGTCTTTTCCTCTTCTGAATCCATTAGAGAATCATGTTTTGCTGATATATCTAGAGAAGGCGCTCTGCTTCTGTTTGGATTCCCTGAACTTGTTGCAAAGAGTAAAAAGTCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTTATCAATCTCCGAAAATTGGCCGGACATCGAATCGATTTTCTCGTCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTAACCTCACTGGCGAAACTCGGCGAGTTAGTCCGGGCCATAGTTATGGATCTCGAAGTCTCGATTCAGAAAAACTCATCCAAATCGCCGGTTGCTGGGGGTGGCGTTCATTCCTTAACGCTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACGGCAATATTTTGACGGATATTTTCGCTGATTGGACTCCGCCTGAAAAATCCTCTCTCGAACAAATCTTCTTCAACAGTTCAGAATCCGACGATTCTCCAACGGCTTCAGCAATCTCTTTACGAATGGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCAAAGCGCTACAGAGACGTTTCACTCTCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCGAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCAGGAGGCGAAAGTAAGGCAATTCGCGGCGAAGTACGAAGCATTGGCTTGGGGAAGAGTCTTCGATTCTTTGCCGGAGAATCCAACTGAGAGATTCTCACAGGAAGAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCTTTCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCTGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCCGATTGGGCGAGCGTTTCCACCTCGTCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCGGGACCCCGTTAA 1920 45.52 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPASTPRRSFNDAMIEQSIESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLIASEDSASASDRLVYAQTLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDGTLDDEIQAIDDSISEVEQVSFIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYLSISENWPDIESIFSSESSSVVRSQALTSLAKLGELVRAIVMDLEVSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYGNILTDIFADWTPPEKSSLEQIFFNSSESDDSPTASAISLRMGWLILVLLCKLDSKAKRYRDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKQEAKVRQFAAKYEALAWGRVFDSLPENPTERFSQEEAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33944797 33946716 - ClG42_10g0205300.10 Clacu10g2053 260677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2053 639 Pfam Exo70 exocyst complex subunit C-terminal 249 609 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu10g2053 639 Pfam Exocyst complex component Exo70 N-terminal 49 132 - -
Clacu10g2053 639 SUPERFAMILY Cullin repeat-like 75 611 IPR016159 -
Clacu10g2053 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 612 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu10g2053 639 MobiDBLite consensus disorder prediction 617 639 - -
Clacu10g2053 639 Gene3D Exocyst complex component Exo70 56 617 - -
Clacu10g2053 639 MobiDBLite consensus disorder prediction 18 38 - -
Clacu10g2053 639 FunFam Exocyst subunit Exo70 family protein 66 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2122 Clacu-Chr2:34369728 Clacu10g2053 Clacu-Chr10:33944797 8.00E-177 dispersed
Clacu03g0202 Clacu-Chr3:2230838 Clacu10g2053 Clacu-Chr10:33944797 2.10E-164 dispersed
Clacu10g2053 Clacu-Chr10:33944797 Clacu11g0749 Clacu-Chr11:7334305 8.20E-12 dispersed
Clacu01g0869 Clacu-Chr1:9936741 Clacu10g2053 Clacu-Chr10:33944797 1.00E-71 transposed
Clacu10g2053 Clacu-Chr10:33944797 Clacu02g1391 Clacu-Chr2:27110502 5.00E-142 wgd
Clacu10g2053 Clacu-Chr10:33944797 Clacu04g0899 Clacu-Chr4:23330430 2.60E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2053 K07195 - csv:101208543 1097.42