Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2053 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCCAGGTATTCCATCTCGTCGCCGTCCAGAACTCCGGCATCGACTCCACGCCGGAGCTTCAACGACGCGATGATCGAACAGAGCATCGAATCTGCCGCGGCGATTGTGATGAAATGGAATCCAGATTCTTCAACGTACGCCAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTCATTAAGCGTGTGAATGATCTTCAAAAAGCGATGCATCTTATTGCTTCGGAAGATTCCGCTTCCGCTTCCGATCGCCTTGTTTACGCTCAAACTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTTTATCAGATTCTCTCCATGAATCGTGCTCATCTAGATCCGGAATCTGTTTCCACTAGATCCTCTCGCTGCTCCACCAGATCGAGCACTTCCGTTGATTTCGACGATGACGGAACCCTAGACGATGAAATCCAAGCCATAGACGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTCATTGTAATGGAGGATTTACGAGCCATAGCCGAGTGTATGATCTCCTCTGGCTACGCTAAAGAATGCGTTAATATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGCCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAACAAAATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTCGCAATTAGAACGTTGTTCGTTGGCGAACGAATTCTCTGTGATCACGTCTTTTCCTCTTCTGAATCCATTAGAGAATCATGTTTTGCTGATATATCTAGAGAAGGCGCTCTGCTTCTGTTTGGATTCCCTGAACTTGTTGCAAAGAGTAAAAAGTCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTTATCAATCTCCGAAAATTGGCCGGACATCGAATCGATTTTCTCGTCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTAACCTCACTGGCGAAACTCGGCGAGTTAGTCCGGGCCATAGTTATGGATCTCGAAGTCTCGATTCAGAAAAACTCATCCAAATCGCCGGTTGCTGGGGGTGGCGTTCATTCCTTAACGCTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACGGCAATATTTTGACGGATATTTTCGCTGATTGGACTCCGCCTGAAAAATCCTCTCTCGAACAAATCTTCTTCAACAGTTCAGAATCCGACGATTCTCCAACGGCTTCAGCAATCTCTTTACGAATGGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCAAAGCGCTACAGAGACGTTTCACTCTCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCGAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCAGGAGGCGAAAGTAAGGCAATTCGCGGCGAAGTACGAAGCATTGGCTTGGGGAAGAGTCTTCGATTCTTTGCCGGAGAATCCAACTGAGAGATTCTCACAGGAAGAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCTTTCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCTGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCCGATTGGGCGAGCGTTTCCACCTCGTCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCGGGACCCCGTTAA 1920 45.52 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPASTPRRSFNDAMIEQSIESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLIASEDSASASDRLVYAQTLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDGTLDDEIQAIDDSISEVEQVSFIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYLSISENWPDIESIFSSESSSVVRSQALTSLAKLGELVRAIVMDLEVSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYGNILTDIFADWTPPEKSSLEQIFFNSSESDDSPTASAISLRMGWLILVLLCKLDSKAKRYRDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKQEAKVRQFAAKYEALAWGRVFDSLPENPTERFSQEEAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33944797 33946716 - ClG42_10g0205300.10 Clacu10g2053 260677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2053 639 Pfam Exo70 exocyst complex subunit C-terminal 249 609 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu10g2053 639 Pfam Exocyst complex component Exo70 N-terminal 49 132 - -
Clacu10g2053 639 SUPERFAMILY Cullin repeat-like 75 611 IPR016159 -
Clacu10g2053 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 612 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu10g2053 639 MobiDBLite consensus disorder prediction 617 639 - -
Clacu10g2053 639 Gene3D Exocyst complex component Exo70 56 617 - -
Clacu10g2053 639 MobiDBLite consensus disorder prediction 18 38 - -
Clacu10g2053 639 FunFam Exocyst subunit Exo70 family protein 66 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2053 K07195 - - csv:101208543 1097.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2122 Clacu-Chr2:34369728 Clacu10g2053 Clacu-Chr10:33944797 8.00E-177 dispersed
Clacu03g0202 Clacu-Chr3:2230838 Clacu10g2053 Clacu-Chr10:33944797 2.10E-164 dispersed
Clacu10g2053 Clacu-Chr10:33944797 Clacu11g0749 Clacu-Chr11:7334305 8.20E-12 dispersed
Clacu01g0869 Clacu-Chr1:9936741 Clacu10g2053 Clacu-Chr10:33944797 1.00E-71 transposed
Clacu10g2053 Clacu-Chr10:33944797 Clacu02g1391 Clacu-Chr2:27110502 5.00E-142 wgd
Clacu10g2053 Clacu-Chr10:33944797 Clacu04g0899 Clacu-Chr4:23330430 2.60E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g639 . . . . Bpe04g01604 . . . . . . . . . . . . Bhi03g01622 . . . Hepe04g0889 . . . . . . . . . . . . . . Csa04g01453 . . . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01975 Cam10g2045 Cec10g2088 Cco10g2071 Clacu10g2053 Cmu10g2801 Cre10g2192 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2379 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.7e-266 913.7
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Clacu05g2379 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Clacu01g1567 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Clacu05g2379 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.7e-166 580.9
Clacu03g0048 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Clacu03g0048 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Clacu07g1547 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Clacu01g0869 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 5.9e-189 657.9
Clacu07g1457 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Clacu07g1457 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Clacu07g1457 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Clacu03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 3.8e-225 778.1
Clacu03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.8e-211 732.6
Clacu08g1414 . 47 718 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Clacu10g2053 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36