Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2063 ATGCCGACACTAGTGAGTGTTGCAAGGCAATGCTTGATGAAGGAGGCGCCAAAAGGATCTCAGATCCGTAGTTCTTGGGAATTCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAGAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCCCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTCACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTTTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTTAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATTGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATCGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGAGGTGCAGCAGCCGATGTTATAA 2742 43.33 MPTLVSVARQCLMKEAPKGSQIRSSWEFNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEIWRNIYWMGEEAAGLAAVTNEPLGRESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDCCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKEVQQPML 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34033669 34043578 - ClG42_10g0206300.10 Clacu10g2063 260687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2063 913 SUPERFAMILY FYVE/PHD zinc finger 640 695 IPR011011 -
Clacu10g2063 913 SUPERFAMILY FYVE/PHD zinc finger 558 605 IPR011011 -
Clacu10g2063 913 ProSiteProfiles Zinc finger PHD-type profile. 639 700 IPR019787 -
Clacu10g2063 913 ProSitePatterns Zinc finger PHD-type signature. 642 697 IPR019786 -
Clacu10g2063 913 Pfam PHD-finger 563 602 IPR019787 -
Clacu10g2063 913 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 797 885 IPR016181 -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 92 124 - -
Clacu10g2063 913 SMART PHD_3 641 698 IPR001965 -
Clacu10g2063 913 SMART PHD_3 562 603 IPR001965 -
Clacu10g2063 913 Gene3D - 744 907 - -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 165 186 - -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 125 151 - -
Clacu10g2063 913 ProSitePatterns Zinc finger PHD-type signature. 563 602 IPR019786 -
Clacu10g2063 913 FunFam PHD zinc finger protein 640 700 - -
Clacu10g2063 913 PANTHER AUTOIMMUNE REGULATOR 98 910 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Clacu10g2063 913 ProSiteProfiles Zinc finger PHD-type profile. 560 605 IPR019787 -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 90 151 - -
Clacu10g2063 913 FunFam PHD finger family protein 740 907 - -
Clacu10g2063 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 622 IPR013083 -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 242 256 - -
Clacu10g2063 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 700 IPR013083 -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 165 190 - -
Clacu10g2063 913 Pfam Tify domain binding domain 496 545 IPR032308 -
Clacu10g2063 913 Pfam Tify domain binding domain 329 383 IPR032308 -
Clacu10g2063 913 MobiDBLite consensus disorder prediction 228 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2097 Clacu-Chr2:34147724 Clacu10g2063 Clacu-Chr10:34033669 5.40E-40 dispersed
Clacu02g2222 Clacu-Chr2:35305904 Clacu10g2063 Clacu-Chr10:34033669 2.40E-156 dispersed
Clacu10g1948 Clacu-Chr10:33071633 Clacu10g2063 Clacu-Chr10:34033669 1.20E-144 dispersed
Clacu10g2063 Clacu-Chr10:34033669 Clacu07g0303 Clacu-Chr7:3375571 2.90E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2063 - - - 0.0