Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2073 | ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTGCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTACTTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGCGGAGAAGGACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG | 1023 | 52.69 | MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAAATATGDLSFQLGNTTLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEGPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34128820 | 34130285 | - | ClG42_10g0207300.10 | Clacu10g2073 | 260697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2073 | 340 | ProSitePatterns | Zinc finger Dof-type signature. | 83 | 119 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 16 | 34 | - | - | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 246 | 310 | - | - | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 16 | 61 | - | - | |
Clacu10g2073 | 340 | ProSiteProfiles | Zinc finger Dof-type profile. | 81 | 135 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 122 | 180 | - | - | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
Clacu10g2073 | 340 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 68 | 163 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 139 | 174 | - | - | |
Clacu10g2073 | 340 | MobiDBLite | consensus disorder prediction | 279 | 310 | - | - | |
Clacu10g2073 | 340 | Pfam | Dof domain, zinc finger | 80 | 135 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g2073 | 340 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 41 | 51 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g0834 | Clacu-Chr10:15262536 | Clacu10g2073 | Clacu-Chr10:34128820 | 5.80E-28 | dispersed | |
Clacu10g1579 | Clacu-Chr10:29094752 | Clacu10g2073 | Clacu-Chr10:34128820 | 2.40E-22 | dispersed | |
Clacu10g1807 | Clacu-Chr10:31741914 | Clacu10g2073 | Clacu-Chr10:34128820 | 3.10E-26 | dispersed | |
Clacu10g2073 | Clacu-Chr10:34128820 | Clacu02g2084 | Clacu-Chr2:34070678 | 1.00E-37 | wgd | |
Clacu10g2073 | Clacu-Chr10:34128820 | Clacu03g0162 | Clacu-Chr3:1748121 | 6.50E-40 | wgd | |
Clacu10g2073 | Clacu-Chr10:34128820 | Clacu04g0873 | Clacu-Chr4:23098820 | 3.60E-38 | wgd | |
Clacu10g2073 | Clacu-Chr10:34128820 | Clacu07g0315 | Clacu-Chr7:3531525 | 2.10E-46 | wgd | |
Clacu10g2073 | Clacu-Chr10:34128820 | Clacu09g2023 | Clacu-Chr9:35028519 | 1.50E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48574 | PF02701 | zf-Dof | 3.40E-32 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2073 | - | - | - | 0.0 |