Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2073 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTGCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTACTTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGCGGAGAAGGACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1023 52.69 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAAATATGDLSFQLGNTTLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEGPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34128820 34130285 - ClG42_10g0207300.10 Clacu10g2073 260697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2073 340 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g2073 340 MobiDBLite consensus disorder prediction 16 34 - -
Clacu10g2073 340 MobiDBLite consensus disorder prediction 246 310 - -
Clacu10g2073 340 MobiDBLite consensus disorder prediction 16 61 - -
Clacu10g2073 340 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g2073 340 MobiDBLite consensus disorder prediction 122 180 - -
Clacu10g2073 340 MobiDBLite consensus disorder prediction 35 55 - -
Clacu10g2073 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 163 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g2073 340 MobiDBLite consensus disorder prediction 139 174 - -
Clacu10g2073 340 MobiDBLite consensus disorder prediction 279 310 - -
Clacu10g2073 340 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g2073 340 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0834 Clacu-Chr10:15262536 Clacu10g2073 Clacu-Chr10:34128820 5.80E-28 dispersed
Clacu10g1579 Clacu-Chr10:29094752 Clacu10g2073 Clacu-Chr10:34128820 2.40E-22 dispersed
Clacu10g1807 Clacu-Chr10:31741914 Clacu10g2073 Clacu-Chr10:34128820 3.10E-26 dispersed
Clacu10g2073 Clacu-Chr10:34128820 Clacu02g2084 Clacu-Chr2:34070678 1.00E-37 wgd
Clacu10g2073 Clacu-Chr10:34128820 Clacu03g0162 Clacu-Chr3:1748121 6.50E-40 wgd
Clacu10g2073 Clacu-Chr10:34128820 Clacu04g0873 Clacu-Chr4:23098820 3.60E-38 wgd
Clacu10g2073 Clacu-Chr10:34128820 Clacu07g0315 Clacu-Chr7:3531525 2.10E-46 wgd
Clacu10g2073 Clacu-Chr10:34128820 Clacu09g2023 Clacu-Chr9:35028519 1.50E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48574 PF02701 zf-Dof 3.40E-32 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2073 - - - 0.0