Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2102 ATGGCCCAACTCTGTTTTCTCTGTTTCTTCTTCTTCCTCTGCGTCGCCGGCCCCGCCGCATCTCAGCAGCTCTACTTCGCTGGATTTCATGACGCCGCCGCCACCGCCGCCAACTTAACCCTCACTGACATCGCCAAGATCGAGCAGAACGGAATCTTAAAGCTCACAAATGACACCAGTCGATTACAGGGTCATGCCTTTTACAGTTCCCCTGTTCGCTTCAAAAACTCTTCCGACGGCAAAGCTTTTTCCTTCTCCACCGCTTTTGTCATCGCCGTCGTCCCCGAATACCCGACTCTAGGCGGCCATGGACTCGCCTTCACCATTGCCCATTCGAAGAACCTCCGTGGACTTCCCAGTCAGTATTTAGGCCTTCTCAATGCGACCGACGTCGGAAACTTCACGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTTGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAATATGGTTTCTAATGCCTCCACCACCGCTTCCTATTTCGTCGACGATGGACCCAACAAGCAGAATCTAACCCTAAAAAGTGGGAGGCCGATTCAAGCTTGGATCGATTACGATTCCTCTGTAAATTCACTCACGGTTGCGCTTTCTCCGTTTTCAACCAAACCCAAGAAGCCGATTCTGTCGTTTAATGTAGATCTCTCTCCGATTCTTCAGGAGTCTATGTACGTTGGGTTCTCGGCCTCAACTGGGCTTCTTGCAAGTTCGCACTATGTGTTGGGATGGAGTTTCAGTATGAATGGACCAGCTGAGTCTCTGGATCTGTCTTCTTTGCCTTCTGTTCCAGGTCCGAAGAAGAAGCACACTGGTTTTACAATTGGGGTTTCTGTTGCGGCCGTTTTGATTGTGGTAATCGCGATTTGTGTTGCTGTTTTAATCATTTGGAAGATAAAAAACGCTGATATAATCGAGGCCTGGGAGCACGAAATCGGCCCTCATCGGTACTCTTACAAGGAGCTTAAGCAAGCGACTAAGCGATTTAGGGATAAAGAGCTCTTAGGGCGCGGTGGGTTTGGGAAAGTTTACAAAGGGACTTTGCCGAATTCGAAAACCCAAGTGGCTGTGAAGCGGATTTCTCACGAATCGAAACAGGGCCTAAGGGAATTTGTGTCGGAAATCGCTAGCATTGGCCGGCTTCGTCACCGGAACTTGGTTCAGTTGCTGGGATGGTGTCGCCGCCGTGGCGATCTGCTTCTGGTTTATGATTTCATGGCTAATGGGAGCTTGGATAACTACATTTTCGACGACCCGGATGTGAATCTGAGTTGGGAACAAAGGTTCAGAATCATTAAGGGCGTCGCCTCCGGTTTGCTCTACTTGCACGAAGGCTACGAGCAGGTGGTGATTCATAGAGATGTGAAAGCCAGTAATGTCCTGCTCGACGGCGAGATGAATGGGAAGCTCGGCGATTTCGGCCTGGCTCGACTATACGAACACGGGGCAAACCCGAGCACGACTCGGGTCGTCGGCACTCTGGGATATCTGGCGCCGGAGTTACCCAGAACAGGGAAGGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTTCTGCTAGAAGTGGCTTGCGGACGGCGGCCGATCGACCCGAAATCGTCGTCGGAAGAGCTAGTGCTGGTGGATTGGGTGTGGGAGAATTACAGGGAAGGGAAATTGCTGGAAGTAATGGATCCAAAATTGAAAGGGGATTTCAATGTAGCTGAGGCAGTGATGATTTTGAAGCTGGGGTTGTTCTGTTCGAACGATTCGGCGGCGGCGCGGCCTACTATGAGGCAGGTGGTGAGGTTTCTGGAGGGGGAGATTGGAGTTCCTGAGGAGATATCAGCGCCGAAAGTGGTGGAAGGAGGGAGGAATGGTGAAGGGTTCGATGATTTTGTGAATTCATTTGCATCTTCTTCCTTTAACAAGTTTAGTTCTTATTCATCGACTGGAAATAGGGATATGGATATGAGTTTTGCTTCATTTTCAACTTCTCCTCTTTCACTTCTCAACGGCAGAGACTAA 2052 50.29 MAQLCFLCFFFFLCVAGPAASQQLYFAGFHDAAATAANLTLTDIAKIEQNGILKLTNDTSRLQGHAFYSSPVRFKNSSDGKAFSFSTAFVIAVVPEYPTLGGHGLAFTIAHSKNLRGLPSQYLGLLNATDVGNFTNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNASTTASYFVDDGPNKQNLTLKSGRPIQAWIDYDSSVNSLTVALSPFSTKPKKPILSFNVDLSPILQESMYVGFSASTGLLASSHYVLGWSFSMNGPAESLDLSSLPSVPGPKKKHTGFTIGVSVAAVLIVVIAICVAVLIIWKIKNADIIEAWEHEIGPHRYSYKELKQATKRFRDKELLGRGGFGKVYKGTLPNSKTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDDPDVNLSWEQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKSSSEELVLVDWVWENYREGKLLEVMDPKLKGDFNVAEAVMILKLGLFCSNDSAAARPTMRQVVRFLEGEIGVPEEISAPKVVEGGRNGEGFDDFVNSFASSSFNKFSSYSSTGNRDMDMSFASFSTSPLSLLNGRD 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34303683 34305830 - ClG42_10g0210200.10 Clacu10g2102 260726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2102 683 SUPERFAMILY Protein kinase-like (PK-like) 324 626 IPR011009 -
Clacu10g2102 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 282 IPR013320 -
Clacu10g2102 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2102 683 PANTHER - 39 633 IPR050528 GO:0005886(PANTHER)
Clacu10g2102 683 CDD STKc_IRAK 349 615 - -
Clacu10g2102 683 CDD lectin_legume_LecRK_Arcelin_ConA 45 264 IPR001220 GO:0030246(InterPro)
Clacu10g2102 683 SMART serkin_6 343 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2102 683 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Clacu10g2102 683 Gene3D Transferase(Phosphotransferase) domain 1 420 628 - -
Clacu10g2102 683 ProSiteProfiles Protein kinase domain profile. 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2102 683 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Clacu10g2102 683 Pfam Protein kinase domain 344 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2102 683 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Clacu10g2102 683 FunFam L-type lectin-domain containing receptor kinase S.4 20 268 - -
Clacu10g2102 683 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524(InterPro)
Clacu10g2102 683 Pfam Legume lectin domain 23 274 IPR001220 GO:0030246(InterPro)
Clacu10g2102 683 Gene3D - 22 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0847 Clacu-Chr4:22823610 Clacu10g2102 Clacu-Chr10:34303683 4.10E-216 dispersed
Clacu04g0849 Clacu-Chr4:22839548 Clacu10g2102 Clacu-Chr10:34303683 7.50E-189 dispersed
Clacu07g0274 Clacu-Chr7:3102491 Clacu10g2102 Clacu-Chr10:34303683 2.00E-125 dispersed
Clacu10g1743 Clacu-Chr10:30955807 Clacu10g2102 Clacu-Chr10:34303683 2.00E-101 dispersed
Clacu10g2102 Clacu-Chr10:34303683 Clacu10g2199 Clacu-Chr10:35070479 4.30E-152 dispersed
Clacu02g0319 Clacu-Chr2:2910712 Clacu10g2102 Clacu-Chr10:34303683 9.60E-99 transposed
Clacu06g1839 Clacu-Chr6:28926513 Clacu10g2102 Clacu-Chr10:34303683 4.00E-139 transposed
Clacu08g0811 Clacu-Chr8:18157808 Clacu10g2102 Clacu-Chr10:34303683 7.60E-96 transposed
Clacu09g1691 Clacu-Chr9:30364583 Clacu10g2102 Clacu-Chr10:34303683 8.90E-97 transposed
Clacu10g0424 Clacu-Chr10:5314857 Clacu10g2102 Clacu-Chr10:34303683 9.90E-117 transposed
Clacu10g2014 Clacu-Chr10:33622348 Clacu10g2102 Clacu-Chr10:34303683 2.60E-110 transposed
Clacu10g2102 Clacu-Chr10:34303683 Clacu04g0846 Clacu-Chr4:22818814 5.10E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73913 PF00069 Pkinase 6.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2102 - - - 0.0