Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2121 | ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCAGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCTTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTCGATGAGGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAACGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAACACAAAAGAATTTACATAGAGAAGAGCGAAATGCCAACAGGGCAAACGATCATCATAATCCATCTAACTCCCTCGCAATGGATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTCGAGTCCATGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAACAGCGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAAAACAATGTCATAGGTGGCTTTTCAGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCCAAGGTAACAATGACGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA | 1428 | 47.06 | MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREERNANRANDHHNPSNSLAMDNPSTSAQQIQDTPAKREPNDMPMGNQVESMNVSYNLSSHPHVGANTNIAGNNSGGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34445374 | 34448568 | - | ClG42_10g0212100.10 | Clacu10g2121 | 260745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2121 | 475 | MobiDBLite | consensus disorder prediction | 341 | 382 | - | - | |
Clacu10g2121 | 475 | FunFam | BEL1-like homeodomain protein 9 | 258 | 320 | - | - | |
Clacu10g2121 | 475 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Clacu10g2121 | 475 | SUPERFAMILY | Homeodomain-like | 257 | 322 | IPR009057 | - | |
Clacu10g2121 | 475 | ProSiteProfiles | 'Homeobox' domain profile. | 252 | 315 | IPR001356 | GO:0003677(InterPro) | |
Clacu10g2121 | 475 | MobiDBLite | consensus disorder prediction | 145 | 164 | - | - | |
Clacu10g2121 | 475 | Pfam | Associated with HOX | 103 | 224 | IPR006563 | - | |
Clacu10g2121 | 475 | Pfam | Homeobox KN domain | 272 | 311 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g2121 | 475 | MobiDBLite | consensus disorder prediction | 345 | 370 | - | - | |
Clacu10g2121 | 475 | CDD | homeodomain | 255 | 316 | IPR001356 | GO:0003677(InterPro) | |
Clacu10g2121 | 475 | Gene3D | - | 258 | 320 | - | - | |
Clacu10g2121 | 475 | SMART | prehox3 | 98 | 226 | IPR006563 | - | |
Clacu10g2121 | 475 | Coils | Coil | 326 | 346 | - | - | |
Clacu10g2121 | 475 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 41 | 358 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Clacu10g2121 | 475 | SMART | HOX_1 | 255 | 319 | IPR001356 | GO:0003677(InterPro) | |
Clacu10g2121 | 475 | MobiDBLite | consensus disorder prediction | 10 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g1809 | Clacu-Chr10:31768159 | Clacu10g2121 | Clacu-Chr10:34445374 | 3.20E-49 | dispersed | |
Clacu10g2121 | Clacu-Chr10:34445374 | Clacu11g0554 | Clacu-Chr11:5221210 | 3.70E-49 | dispersed | |
Clacu03g0294 | Clacu-Chr3:3443229 | Clacu10g2121 | Clacu-Chr10:34445374 | 7.90E-63 | transposed | |
Clacu10g2121 | Clacu-Chr10:34445374 | Clacu04g0823 | Clacu-Chr4:22598288 | 8.90E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48577 | PF07526 | POX | 5.80E-29 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2121 | - | - | - | 0.0 |