Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2121 ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCAGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCTTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTCGATGAGGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAACGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAACACAAAAGAATTTACATAGAGAAGAGCGAAATGCCAACAGGGCAAACGATCATCATAATCCATCTAACTCCCTCGCAATGGATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTCGAGTCCATGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAACAGCGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAAAACAATGTCATAGGTGGCTTTTCAGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCCAAGGTAACAATGACGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA 1428 47.06 MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREERNANRANDHHNPSNSLAMDNPSTSAQQIQDTPAKREPNDMPMGNQVESMNVSYNLSSHPHVGANTNIAGNNSGGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34445374 34448568 - ClG42_10g0212100.10 Clacu10g2121 260745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2121 475 MobiDBLite consensus disorder prediction 341 382 - -
Clacu10g2121 475 FunFam BEL1-like homeodomain protein 9 258 320 - -
Clacu10g2121 475 MobiDBLite consensus disorder prediction 1 38 - -
Clacu10g2121 475 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
Clacu10g2121 475 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677(InterPro)
Clacu10g2121 475 MobiDBLite consensus disorder prediction 145 164 - -
Clacu10g2121 475 Pfam Associated with HOX 103 224 IPR006563 -
Clacu10g2121 475 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g2121 475 MobiDBLite consensus disorder prediction 345 370 - -
Clacu10g2121 475 CDD homeodomain 255 316 IPR001356 GO:0003677(InterPro)
Clacu10g2121 475 Gene3D - 258 320 - -
Clacu10g2121 475 SMART prehox3 98 226 IPR006563 -
Clacu10g2121 475 Coils Coil 326 346 - -
Clacu10g2121 475 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 358 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu10g2121 475 SMART HOX_1 255 319 IPR001356 GO:0003677(InterPro)
Clacu10g2121 475 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1809 Clacu-Chr10:31768159 Clacu10g2121 Clacu-Chr10:34445374 3.20E-49 dispersed
Clacu10g2121 Clacu-Chr10:34445374 Clacu11g0554 Clacu-Chr11:5221210 3.70E-49 dispersed
Clacu03g0294 Clacu-Chr3:3443229 Clacu10g2121 Clacu-Chr10:34445374 7.90E-63 transposed
Clacu10g2121 Clacu-Chr10:34445374 Clacu04g0823 Clacu-Chr4:22598288 8.90E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48577 PF07526 POX 5.80E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2121 - - - 0.0