Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g2134 | ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCCGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTCTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCGGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCCGTGGAGGTTGAAAATGAAAATGGGATAACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCAGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAACGAATCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGAGGGCACCGGTTTCTGAATTTTTTACTCGCTTGTATGGAAGAAAGTAGTTTCGAAACGGTGGAAAATCCGATCGAGGAACTTGCAGAATTTGCAGCTGCAAAAGACCCTCCAGCGAATTGCCTACAGAACATGTGTCGTCCTGATGTCGGGGAAGACGAGGCGTGTATGGGATGGGACCTCTCTGTTGTCAAATGGAAACAAAATTCTGTCAGGAAAACTCATCAAACTGTGGCGTGA | 846 | 47.04 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSRPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMEESSFETVENPIEELAEFAAAKDPPANCLQNMCRPDVGEDEACMGWDLSVVKWKQNSVRKTHQTVA | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 34544554 | 34547355 | - | ClG42_10g0213400.10 | Clacu10g2134 | 260758 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g2134 | 281 | PANTHER | ZINC FINGER, RING-CH-TYPE | 36 | 215 | - | - | |
| Clacu10g2134 | 281 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Clacu10g2134 | 281 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Clacu10g2134 | 281 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
| Clacu10g2134 | 281 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Clacu10g2134 | 281 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) | |
| Clacu10g2134 | 281 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) | |
| Clacu10g2134 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g2463 | Clacu-Chr1:35098786 | Clacu10g2134 | Clacu-Chr10:34544554 | 1.00E-21 | dispersed | |
| Clacu04g0228 | Clacu-Chr4:7217422 | Clacu10g2134 | Clacu-Chr10:34544554 | 8.70E-08 | dispersed | |
| Clacu10g2134 | Clacu-Chr10:34544554 | Clacu11g1852 | Clacu-Chr11:29657429 | 4.00E-11 | dispersed | |
| Clacu10g2134 | Clacu-Chr10:34544554 | Clacu11g0794 | Clacu-Chr11:7839161 | 7.70E-47 | wgd | |
| Clacu10g2134 | Clacu-Chr10:34544554 | Clacu03g0101 | Clacu-Chr3:1224385 | 4.10E-32 | wgd | |
| Clacu10g2134 | Clacu-Chr10:34544554 | Clacu04g0794 | Clacu-Chr4:22292563 | 7.00E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g2134 | - | - | - | 0.0 |