Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2158 ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGCAGCTCGGAAGGACTACCGAGAGCCGCCCCCGGCGCCCCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTGTAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGCTGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCATCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTCCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACTGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTTTGGGCAGGGCCGTTCATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA 858 52.91 MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTVMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAVVKAFEKGPFELLGGGANTVNEGYSNTAALGAEIIGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHWVFWAGPFIGAALAALYHQTVIRAIPFKSK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34732346 34734871 - ClG42_10g0215800.10 Clacu10g2158 260782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2158 285 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 284 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Clacu10g2158 285 FunFam Probable aquaporin PIP1-2 37 285 - -
Clacu10g2158 285 Pfam Major intrinsic protein 45 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 NCBIfam MIP family channel protein 56 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 SUPERFAMILY Aquaporin-like 47 278 IPR023271 -
Clacu10g2158 285 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Clacu10g2158 285 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2158 285 ProSitePatterns MIP family signature. 112 120 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0405 Clacu-Chr7:4625997 Clacu10g2158 Clacu-Chr10:34732346 9.20E-128 dispersed
Clacu07g0406 Clacu-Chr7:4632940 Clacu10g2158 Clacu-Chr10:34732346 9.20E-128 dispersed
Clacu08g0897 Clacu-Chr8:19070111 Clacu10g2158 Clacu-Chr10:34732346 1.60E-100 dispersed
Clacu10g2005 Clacu-Chr10:33544530 Clacu10g2158 Clacu-Chr10:34732346 1.00E-94 dispersed
Clacu01g2479 Clacu-Chr1:35225250 Clacu10g2158 Clacu-Chr10:34732346 1.30E-17 transposed
Clacu05g0626 Clacu-Chr5:5192801 Clacu10g2158 Clacu-Chr10:34732346 1.10E-15 transposed
Clacu05g1260 Clacu-Chr5:12231136 Clacu10g2158 Clacu-Chr10:34732346 1.00E-16 transposed
Clacu10g2158 Clacu-Chr10:34732346 Clacu07g0403 Clacu-Chr7:4619390 3.80E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2158 K09872 - vvi:100233000 475.707