Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2162 ATGATCTTGGCCTTTTCAACTATACTTTGTTCAACAGATGAATTGGATCGCTCTGCTCTACTTGACTTGAAAGGTAGAGTACTGGATGACCCACTAAAAATCATGAGTTCTTGGAATGATTCCATGCATTTCTGTGAATGGATGGGTGTTACTTGCAACTCAAGCATTAGAAGAGTAGTGGCTTTGGACTTGGAAGCTGGAGATCTAACTGGTTCTCTACCTCCTTCCTTGGGAAATCTCACTTACCTAACTAAAATCAGTTTGGGAGTCAACAAATTGTATGGCCCAATTCCCCAAGAGTTGGGTCGTTTACTTCAATTACGTTTTCTCAATTTATCCTACAATAACTTCGGCGGTGAGTTTCCAGCAAATATAAGTCATTGCAGGGAGTTGGTTGTTTTGGAGATTAGTGGCAATGAATTTGTAGGCCAAATTCCACACCAATTGTCCACATTGACCAAGTTGGAACGATTCATGTTCGGCATCAACAATCTGAGTGGAACTATTCCACCTTGGGTAGGAAATTTTTCTTCGATATTGGCTTTGTCATTTGGGCGGAACAACTTTCATGGAAGCATTCCAAGTGAAATAGGACGTCTATCTAAAATGGAATTCTTCTCAGTTATTTCAAATAAATTGACAGGTACAATGCCAATTTCAATCTACAATATCAGTTCTCTAACTCTCTTTCATTTTACTGAAAATCAATTGGAAGGAAGTCTGCCACCAAATATTGGATTTACTCTTCCCAATCTTCAGACATTTGCTGGTGGTATTAATAATTTTGATGGGCCTATTCCAAAGTCCTTGACTAATATCTCTACTCTTCAAATCTTAGATTTTCCAAATAACAATCTTGTTGGAATGATACCTGATGACATAGGGAGATTAAAACACCTTCAGCGTCTAAATTTTGGATCAAATAGTCTTGGAAGTGAAAAAATTGGTGATTTAAATTTTATTAATTCCTTGGTTAATTGTACTACGCTAAGGATTTTGGGTTTAAATACGAACCATTTTGGAGGACCATTACCTTCGTCCATTGCCAACCTTTCAAACCAGCTACAAGCTATAACCTTGGGTGATAATATGTTAAGTGGAAGCATTCCTTTAGGGATTACAAACTTGGTTAATTTGCAAGTTCTTGCAATGGAAGGCAACATGATGAACGGTAGTATCCCTCCCAATATAGGGAGCCTTAAAAATTTAGTGCTTTTGTACTTGGGTGGAAACGGATTAACTGGGCCAATCCCTTCCTCCATTGGTAACTTGACTTCACTCACCAACCTCTACTTGAGTTATAACAAACATGACGGACGTATACCAACGAGCTTAGGGGAATGCAAAACCCTCCTATCTCTTCAGCTATCTAGTAACAACCTAACCGGCTCCATACCAAAACAAATCTTTGGAATCCTTTCCCTTTCCATCACTTTGGCCTTAGATCATAACTCATTTACTGGTTCATTGCCAAATGAAGTGTGTGGGTTACTTAGTTTATTAGAACTAGATGTATCAGAAAACAAATTATCAGGTGATATTCCTAGCACCCTCGGAAAATGTACTAGCATGGAACGATTGTATCTTGGGGGAAACCAATTTAGGGGAACAATCCCTCAATCTTTAGAAACTTTAAATAGCCTTGTACAACTAAATTTATCAAGAAACAACTTGACAGGTTCGATTCCCCAATTTCTCGGTAAACTTCTTTCGCTCGTGTATCTCGATTTATCCTACAATAACTTTGTAGGAAAAATGCCAGAAGAAGGAGTTTTTTCCAACTCAACCATGTTTTCTATCCTGGGGAATAACAATTTGTGTGATGGTTTACAAGAATTACATCTACCTCCATGCACGTCTAATCAAACACATTCATCAAAGTTACTAATCCCTATAGCATCTGCAGTCGCATTTGCTGTTTTTTTGGTCAGCTTCTTTTTTGTGTGTTTTCTCCTTAACAAGTCGAGGAAGGATACTTCAACTTCATCTCCATCTTCATCGTTTGCAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTTAGTAAAGCAACCCACGGATTCTCTATGGATAATTTCATTGGTTCTGGTAGTTTTGGCACTGTGTATAAAGGTGTTCTTTCAAATGATGGATCTATTGTTGCAATTAAAGTTTTGAATCTCCAACAACAAGGTGCTTCCCAGAGTTTTGTTGATGAATGCAACACCCTCTCAAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGCACACGGCAATGAATTTAAAGCTCTAGTTTTCAATTTTATGTCAAATGGAAATCTTGATAGTTGGCTTCATCCAACAAACCAAGGGCACAACCAAAGGAGGTTAAGTCTCATCCAAAGATTGAACATTGCCATTGATATTGCATATGGATTAGACTATCTCCATAATCATTGTGAAACTCCTATTGTTCATTGTGATTTGAAGCCTAGCAACATACTCCTTGACGAAGATATGACAGCTCATGTAGGAGACTTTGGATTAGCTAGATTCATGTTAGAAAGATCAAGTGATCAAATATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATTGGATATATTCCACCAGAGTACGGTACGGGTAGTAGAATTTCCATCGAAGGAGATATCTTCAGCTATGGGATACTGCTACTAGAGATGATCATCGGAAAAAGACCCACCGACAACACCTTTAGCAATGATGTAGATATTCATTTGTTCACTACAAGGGCACTGTCTCAGGATGCCTTTAGCATAATCGACTCTTCAATACTATTTGAAGAAACACGTCATGAAGAAGATGAGGAAGACATGGTAGAAGTAATAGCGATGAAGAGCGAAGAAGATCAAAGAGAAATGGTACCAAGATGGATGGAAGAGTGTGTAATCTCGATAATGAGAATTGGCTTGACATGCTCTTTGAAAGCACCCAGTGAGAGAACGTCAATGAATATTGTTGTTAATAATTTGCAAGCAATTAAAAGCTCCTATCTCGAATTTAAAAAGGCATAA 3045 37.96 MILAFSTILCSTDELDRSALLDLKGRVLDDPLKIMSSWNDSMHFCEWMGVTCNSSIRRVVALDLEAGDLTGSLPPSLGNLTYLTKISLGVNKLYGPIPQELGRLLQLRFLNLSYNNFGGEFPANISHCRELVVLEISGNEFVGQIPHQLSTLTKLERFMFGINNLSGTIPPWVGNFSSILALSFGRNNFHGSIPSEIGRLSKMEFFSVISNKLTGTMPISIYNISSLTLFHFTENQLEGSLPPNIGFTLPNLQTFAGGINNFDGPIPKSLTNISTLQILDFPNNNLVGMIPDDIGRLKHLQRLNFGSNSLGSEKIGDLNFINSLVNCTTLRILGLNTNHFGGPLPSSIANLSNQLQAITLGDNMLSGSIPLGITNLVNLQVLAMEGNMMNGSIPPNIGSLKNLVLLYLGGNGLTGPIPSSIGNLTSLTNLYLSYNKHDGRIPTSLGECKTLLSLQLSSNNLTGSIPKQIFGILSLSITLALDHNSFTGSLPNEVCGLLSLLELDVSENKLSGDIPSTLGKCTSMERLYLGGNQFRGTIPQSLETLNSLVQLNLSRNNLTGSIPQFLGKLLSLVYLDLSYNNFVGKMPEEGVFSNSTMFSILGNNNLCDGLQELHLPPCTSNQTHSSKLLIPIASAVAFAVFLVSFFFVCFLLNKSRKDTSTSSPSSSFAKEFLPQISYLELSKATHGFSMDNFIGSGSFGTVYKGVLSNDGSIVAIKVLNLQQQGASQSFVDECNTLSNIRHRNLLKIITSCSSIDAHGNEFKALVFNFMSNGNLDSWLHPTNQGHNQRRLSLIQRLNIAIDIAYGLDYLHNHCETPIVHCDLKPSNILLDEDMTAHVGDFGLARFMLERSSDQISFSQTMSLALKGSIGYIPPEYGTGSRISIEGDIFSYGILLLEMIIGKRPTDNTFSNDVDIHLFTTRALSQDAFSIIDSSILFEETRHEEDEEDMVEVIAMKSEEDQREMVPRWMEECVISIMRIGLTCSLKAPSERTSMNIVVNNLQAIKSSYLEFKKA 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34789074 34792217 + ClG42_10g0216200.10 Clacu10g2162 260786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2162 1014 Gene3D Ribonuclease Inhibitor 318 621 IPR032675 -
Clacu10g2162 1014 Gene3D Ribonuclease Inhibitor 164 254 IPR032675 -
Clacu10g2162 1014 Gene3D Ribonuclease Inhibitor 13 163 IPR032675 -
Clacu10g2162 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2162 1014 SMART LRR_typ_2 497 521 IPR003591 -
Clacu10g2162 1014 SMART LRR_typ_2 400 424 IPR003591 -
Clacu10g2162 1014 SMART LRR_typ_2 104 128 IPR003591 -
Clacu10g2162 1014 SMART LRR_typ_2 545 568 IPR003591 -
Clacu10g2162 1014 SMART LRR_typ_2 569 594 IPR003591 -
Clacu10g2162 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 659 769 - -
Clacu10g2162 1014 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515(InterPro)
Clacu10g2162 1014 Gene3D Phosphorylase Kinase; domain 1 650 769 - -
Clacu10g2162 1014 SMART serkin_6 688 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2162 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 319 624 - -
Clacu10g2162 1014 SUPERFAMILY L domain-like 10 308 - -
Clacu10g2162 1014 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524(InterPro)
Clacu10g2162 1014 Pfam Leucine rich repeat N-terminal domain 16 53 IPR013210 -
Clacu10g2162 1014 SUPERFAMILY L domain-like 354 608 - -
Clacu10g2162 1014 Gene3D Transferase(Phosphotransferase) domain 1 770 1013 - -
Clacu10g2162 1014 PANTHER OS04G0122200 PROTEIN 29 1004 IPR051809 -
Clacu10g2162 1014 Gene3D Ribonuclease Inhibitor 255 317 IPR032675 -
Clacu10g2162 1014 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 53 318 - -
Clacu10g2162 1014 Pfam Protein kinase domain 691 916 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2162 1014 ProSiteProfiles Protein kinase domain profile. 688 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2162 1014 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Clacu10g2162 1014 Pfam Leucine Rich Repeat 402 424 IPR001611 GO:0005515(InterPro)
Clacu10g2162 1014 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Clacu10g2162 1014 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Clacu10g2162 1014 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Clacu10g2162 1014 SUPERFAMILY Protein kinase-like (PK-like) 661 1001 IPR011009 -
Clacu10g2162 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 1014 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1241 Clacu-Chr1:20777777 Clacu10g2162 Clacu-Chr10:34789074 3.20E-183 dispersed
Clacu03g0752 Clacu-Chr3:8386151 Clacu10g2162 Clacu-Chr10:34789074 4.50E-74 dispersed
Clacu10g1280 Clacu-Chr10:25650005 Clacu10g2162 Clacu-Chr10:34789074 4.80E-66 dispersed
Clacu10g2162 Clacu-Chr10:34789074 Clacu11g0769 Clacu-Chr11:7534720 5.30E-98 dispersed
Clacu10g2161 Clacu-Chr10:34775748 Clacu10g2162 Clacu-Chr10:34789074 4.90E-236 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73921 PF00069 Pkinase 4.70E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2162 - - - 0.0