Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2164 ATGGCTTCTTGTTGCTTTGCTATCCTGAATTGCTGTAAAGGAAATAGCAGTCCCGAGGAACCCGCAGAAGGAATTGCTGTTACCAACAATGTACGCCTCTTTTCTTATAATTCACTGAGGTCAGCAACTAGGAATTTTCATCCATCAACCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGCACCAATGTTGCAGTCAAATCACTGTCTGCAGAATCAGCTCAGGGAACTCGTGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAACATCTCGTTGAACTGATTGGTTGTTGTGTAGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGGTACAATGAGTAAGCATGTCATTCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTTTGGGTCTTGCATACCTACATGAAGAAGCTGAATATTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGATAACGTTACTCATGTTAGCACTCGAGTGGCTGGAACTGTTGGATATTTGGCCCCCGAGTATGCACTTTTAGGACAGTTGACCAAGAAGGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAATAGTTAGTGGAAGTAGCAGCAGTAAAACAGCATTTGGAGAAGAGTTGTCAATGCTCGTGGAATGGACTTGGAAACTAAGACAAGAAGGACGGCTTGTAGAACTAATCGATCCGGAACTGGTCGATTATCCGAAGGCTGAGGTGATGCGTTTCATCACAGTTGCACTCTTCTGTACCCAAGCAGCTGCAAATCAAAGGCCAACCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAGGTACACCTTAATGAAAAACTATTGACAGAGCCAGGAGTATACAAAGGACACAAAACTAGGAAGTTAAATGGTGCTGGTACAAGTTCTGAGGGGACTTCATTCTCCCATGGAGACAGAGGAAATTTTATCAAGTAG 1092 42.12 MASCCFAILNCCKGNSSPEEPAEGIAVTNNVRLFSYNSLRSATRNFHPSTRIGAGGYGVVYKGVLRDGTNVAVKSLSAESAQGTREFLTEINMISNIRHQHLVELIGCCVEGTHRILVYEYLENNSLASTLLGTMSKHVILDWPKRAKICLGTALGLAYLHEEAEYSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIVSGSSSSKTAFGEELSMLVEWTWKLRQEGRLVELIDPELVDYPKAEVMRFITVALFCTQAAANQRPTMKQVVEMLSREVHLNEKLLTEPGVYKGHKTRKLNGAGTSSEGTSFSHGDRGNFIK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34798910 34803044 - ClG42_10g0216400.10 Clacu10g2164 260788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2164 363 MobiDBLite consensus disorder prediction 337 363 - -
Clacu10g2164 363 SMART serkin_6 46 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2164 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2164 363 Pfam Protein tyrosine and serine/threonine kinase 50 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2164 363 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Clacu10g2164 363 FunFam cold-responsive protein kinase 1 17 121 - -
Clacu10g2164 363 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
Clacu10g2164 363 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Clacu10g2164 363 MobiDBLite consensus disorder prediction 341 355 - -
Clacu10g2164 363 PIRSF ILK 6 326 - -
Clacu10g2164 363 CDD STKc_IRAK 52 318 - -
Clacu10g2164 363 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524(InterPro)
Clacu10g2164 363 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 349 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu10g2164 363 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2164 363 SUPERFAMILY Protein kinase-like (PK-like) 25 316 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0595 Clacu-Chr3:6148290 Clacu10g2164 Clacu-Chr10:34798910 1.40E-113 dispersed
Clacu09g0656 Clacu-Chr9:5684249 Clacu10g2164 Clacu-Chr10:34798910 1.20E-73 dispersed
Clacu10g1389 Clacu-Chr10:27010902 Clacu10g2164 Clacu-Chr10:34798910 1.50E-72 dispersed
Clacu10g2164 Clacu-Chr10:34798910 Clacu11g1918 Clacu-Chr11:30185620 1.60E-92 dispersed
Clacu10g2164 Clacu-Chr10:34798910 Clacu07g1066 Clacu-Chr7:25214318 7.00E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73922 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2164 - - - 0.0