Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2166 ATGGCCGCCACCGCATCCTCCTTCATTGGAACTCGTCTTCCTATTGCCCCATCCGGGTCGGGTCGGGTACACGCCAGATTCTCATTCGGCAAACCAAAAAGCGCACCGAAGAAATCGTCAAAAAAGCCCACTTCGGACCGGCCGCTGTGGTACCCGGGGGCCGTGGCGCCGGAGTGGCTGGACGGAAGCTTGGTGGGGGATTACGGGTTCGACCCGTTTGGGCTGGGAAAACCGGCGGAGTACTTGCAGTTCGACTTGGACTCATTGGACCAGAACTTGGCTAAGAATGTGGCTGGTGATGTGATCGGTACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTGTTTGGGTTGCAGAGGTTTCGCGAGTGTGAGCTGATCCATGGAAGGTGGGCTATGTTGGCTACACTCGGTGCCCTTACTGTTGAGTGGCTCACTGGTGTCACTTGGCAAGATGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCAACATTGATATGGATAGAGGTTCTAGTAATTGGGTACATTGAGTTTCAAAGGAATGCTGAGCTTGATCCAGAGAAGAGACTTTACCCTGGGGGCAAGTACTTTGATCCCCTTGGCTTAGCGGCCGACCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATTAAGCACGCTCGCCTCGCCATGGTCGCGTTCCTCGGTTTTGCTGTTCAAGCTGCTGCCACTGGCAAAGGCCCCCTCAATAACTGGGCAACCCATCTGATCTTCAATTGTTCCGACGCCGTTAAGGAAGAATTCCTCAGGCATTTGGCTCCTCACCGGAAGCTTGCGTTCCTGACCTTCTACTTCACACTTGATATGCATCCATTTGGGGTTACGGTTTCGGATCGTTATGCGAGTGTTGTTCCTATCCGAGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCGACTTCTCTGGCAGGACCAGTAACTGGTGACTACGTGCTGGTTGAGAAATTTTGCCTTCAGAAGTATAAATTTTCTCCCGGTGACGTGATTGTTTACCGCTCCCCTTGTAATTACAAGGAGAACCATGTGAAAAGAATTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGATGTTGTCAAGGTTCCAGAAGGACATTGTTGGGTTGAAGGTGACAATGCAGAATGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGGAGGGTGTCGCATATCGTATGGCCACCTCAAAGAATTGGTGCTGTTGAGAAAAAATATCCTCAGGGAAGAATCAAGTCCAACTAA 1362 51.03 MAATASSFIGTRLPIAPSGSGRVHARFSFGKPKSAPKKSSKKPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLIFNCSDAVKEEFLRHLAPHRKLAFLTFYFTLDMHPFGVTVSDRYASVVPIRGASMSPTFNPRATSLAGPVTGDYVLVEKFCLQKYKFSPGDVIVYRSPCNYKENHVKRIIALPGDWVGTRQTYDVVKVPEGHCWVEGDNAECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVEKKYPQGRIKSN 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34809499 34815453 - ClG42_10g0216600.10 Clacu10g2166 260790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2166 453 SUPERFAMILY LexA/Signal peptidase 313 441 IPR036286 -
Clacu10g2166 453 Pfam Chlorophyll A-B binding protein 56 252 IPR022796 -
Clacu10g2166 453 SUPERFAMILY Chlorophyll a-b binding protein 43 267 - -
Clacu10g2166 453 CDD S26_SPase_I 313 428 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Clacu10g2166 453 Gene3D Umud Fragment, subunit A 310 447 - -
Clacu10g2166 453 FunFam Chlorophyll a-b binding protein, chloroplastic 103 281 - -
Clacu10g2166 453 Gene3D Chlorophyll a/b binding protein domain 51 286 - -
Clacu10g2166 453 FunFam Mitochondrial inner membrane protease subunit 308 446 - -
Clacu10g2166 453 PRINTS Bacterial leader peptidase 1 (S26A) family signature 395 414 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Clacu10g2166 453 PRINTS Bacterial leader peptidase 1 (S26A) family signature 310 326 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Clacu10g2166 453 PRINTS Bacterial leader peptidase 1 (S26A) family signature 372 384 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Clacu10g2166 453 MobiDBLite consensus disorder prediction 19 49 - -
Clacu10g2166 453 Pfam Signal peptidase, peptidase S26 393 433 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Clacu10g2166 453 Pfam Signal peptidase, peptidase S26 311 387 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Clacu10g2166 453 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1034 Clacu-Chr7:24768108 Clacu10g2166 Clacu-Chr10:34809499 2.70E-23 dispersed
Clacu10g2166 Clacu-Chr10:34809499 Clacu11g1553 Clacu-Chr11:26628799 9.90E-28 dispersed
Clacu10g2166 Clacu-Chr10:34809499 Clacu04g0770 Clacu-Chr4:22014047 2.10E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2166 K08915 - rcu:8267514 474.937