Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g2169 | ATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGGGTTCGCTGAGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCGTTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTAATCGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCCCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTACGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCTATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGAATCGGCTGACGTGGGGGGAGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCAATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGTAGTGGAAGAAGGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTGTTACCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGCTTATCTGTTGCATTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGGATGGTACTTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATCTTGTCATTGCAACATGTTTCTTCCTAATTAATGTCGACGATTTCGGATTCAGATTTGTACGCTTTGTTCAACGTATTTGCTTCATTCCTTTGGTCTTTGGTTGGTGGTTACTCTGGCTTTCTTGCATATCTCCCTGCCTTGTAAGCAATTCAGACTCAGTTCGGTTCGGGACTATGCGGGAAGAAAAGAAGCCAGTAATTGTATGGCGGAATATCGGAAAGCTTGAAGCCTCTGATCGTCGAGTCTTCAACACCACGGACTGTGAACCACTGTGGAATAGCAACAAGCAATTTGGCACCAGTGGTGGTAGTGATAATGATGGTGATGGAACTAGCTGTAAATTTGCCTGCATTACTGTCGTAGAAAAGCGAAACCGGAAGGAATTCCTGCCGACGTTCGCTCAGTTGCTTAAGCATCCATTATCAATTCTGGCTTTGGTGCACAGAGAAGCAACGCTCTTCGCTGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACAGCTCCGCTTGAGCGAATCAAGCTTATTATGCAGACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAAGTCTATTGGCTTTATCGAGGCAATAAAAACAGTAATAAAGGTGGAAGGAGTTAAAGGACTTTGGAAAGGCAACTTTCCTCAGGTTATACGTATCATACCATATAGTGCTATCCAGCTCTTTGCCTATGAAAATTTCAAGAACCTTTTCAGGGGAGAAGATGGAGAACTTTCTGTGATTGGAAGACTCGCTGCTGGTGCATGCGCTGGCATGACATCCACCTTT | 2031 | 46.33 | MDFEQGTSILQNGVVKGSLRHARTAHNMSSSSLRKKSDLTLVSKVRLGCLRQLLVNLQEVVFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTPLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCYSLPMLFPYAGESADVGGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRQLFEADKELDVYDDVVEEGPVIGKWSAIAWLVVVTLLIALLSEYVVATIEDASETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQDGTSHYMKGLILLLFYLVIATCFFLINVDDFGFRFVRFVQRICFIPLVFGWWLLWLSCISPCLVSNSDSVRFGTMREEKKPVIVWRNIGKLEASDRRVFNTTDCEPLWNSNKQFGTSGGSDNDGDGTSCKFACITVVEKRNRKEFLPTFAQLLKHPLSILALVHREATLFAAGAVSGAAAKTATAPLERIKLIMQTHGARIAQEGAKKSIGFIEAIKTVIKVEGVKGLWKGNFPQVIRIIPYSAIQLFAYENFKNLFRGEDGELSVIGRLAAGACAGMTSTF | 677 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34830172 | 34841351 | - | ClG42_10g0216900.10 | Clacu10g2169 | 260793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g2169 | 677 | Pfam | Mitochondrial carrier protein | 564 | 654 | IPR018108 | - | |
Clacu10g2169 | 677 | NCBIfam | calcium/proton exchanger | 71 | 419 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Clacu10g2169 | 677 | Gene3D | - | 115 | 257 | IPR044880 | - | |
Clacu10g2169 | 677 | Gene3D | - | 260 | 420 | IPR044880 | - | |
Clacu10g2169 | 677 | FunFam | Vacuolar cation/proton exchanger | 264 | 420 | - | - | |
Clacu10g2169 | 677 | Gene3D | Mitochondrial carrier domain | 559 | 677 | IPR023395 | - | |
Clacu10g2169 | 677 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 559 | 651 | IPR018108 | - | |
Clacu10g2169 | 677 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 18 | 421 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Clacu10g2169 | 677 | Pfam | Sodium/calcium exchanger protein | 276 | 418 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu10g2169 | 677 | Pfam | Sodium/calcium exchanger protein | 88 | 245 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu10g2169 | 677 | PRINTS | Mitochondrial carrier protein signature | 564 | 577 | IPR002067 | GO:0055085(InterPro) | |
Clacu10g2169 | 677 | PRINTS | Mitochondrial carrier protein signature | 577 | 591 | IPR002067 | GO:0055085(InterPro) | |
Clacu10g2169 | 677 | PRINTS | Mitochondrial carrier protein signature | 626 | 646 | IPR002067 | GO:0055085(InterPro) | |
Clacu10g2169 | 677 | SUPERFAMILY | Mitochondrial carrier | 563 | 677 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g0399 | Clacu-Chr10:5040621 | Clacu10g2169 | Clacu-Chr10:34830172 | 5.80E-92 | dispersed | |
Clacu04g0760 | Clacu-Chr4:21906277 | Clacu10g2169 | Clacu-Chr10:34830172 | 1.20E-64 | transposed | |
Clacu10g2169 | Clacu-Chr10:34830172 | Clacu03g0077 | Clacu-Chr3:955976 | 1.10E-118 | wgd | |
Clacu10g2169 | Clacu-Chr10:34830172 | Clacu04g0759 | Clacu-Chr4:21896479 | 1.30E-161 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g2169 | K07300 | - | csv:101213176 | 647.506 |