Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2169 ATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGGGTTCGCTGAGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCGTTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTAATCGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCCCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTACGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCTATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGAATCGGCTGACGTGGGGGGAGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCAATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGTAGTGGAAGAAGGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTGTTACCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGCTTATCTGTTGCATTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGGATGGTACTTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATCTTGTCATTGCAACATGTTTCTTCCTAATTAATGTCGACGATTTCGGATTCAGATTTGTACGCTTTGTTCAACGTATTTGCTTCATTCCTTTGGTCTTTGGTTGGTGGTTACTCTGGCTTTCTTGCATATCTCCCTGCCTTGTAAGCAATTCAGACTCAGTTCGGTTCGGGACTATGCGGGAAGAAAAGAAGCCAGTAATTGTATGGCGGAATATCGGAAAGCTTGAAGCCTCTGATCGTCGAGTCTTCAACACCACGGACTGTGAACCACTGTGGAATAGCAACAAGCAATTTGGCACCAGTGGTGGTAGTGATAATGATGGTGATGGAACTAGCTGTAAATTTGCCTGCATTACTGTCGTAGAAAAGCGAAACCGGAAGGAATTCCTGCCGACGTTCGCTCAGTTGCTTAAGCATCCATTATCAATTCTGGCTTTGGTGCACAGAGAAGCAACGCTCTTCGCTGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACAGCTCCGCTTGAGCGAATCAAGCTTATTATGCAGACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAAGTCTATTGGCTTTATCGAGGCAATAAAAACAGTAATAAAGGTGGAAGGAGTTAAAGGACTTTGGAAAGGCAACTTTCCTCAGGTTATACGTATCATACCATATAGTGCTATCCAGCTCTTTGCCTATGAAAATTTCAAGAACCTTTTCAGGGGAGAAGATGGAGAACTTTCTGTGATTGGAAGACTCGCTGCTGGTGCATGCGCTGGCATGACATCCACCTTT 2031 46.33 MDFEQGTSILQNGVVKGSLRHARTAHNMSSSSLRKKSDLTLVSKVRLGCLRQLLVNLQEVVFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTPLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCYSLPMLFPYAGESADVGGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRQLFEADKELDVYDDVVEEGPVIGKWSAIAWLVVVTLLIALLSEYVVATIEDASETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQDGTSHYMKGLILLLFYLVIATCFFLINVDDFGFRFVRFVQRICFIPLVFGWWLLWLSCISPCLVSNSDSVRFGTMREEKKPVIVWRNIGKLEASDRRVFNTTDCEPLWNSNKQFGTSGGSDNDGDGTSCKFACITVVEKRNRKEFLPTFAQLLKHPLSILALVHREATLFAAGAVSGAAAKTATAPLERIKLIMQTHGARIAQEGAKKSIGFIEAIKTVIKVEGVKGLWKGNFPQVIRIIPYSAIQLFAYENFKNLFRGEDGELSVIGRLAAGACAGMTSTF 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34830172 34841351 - ClG42_10g0216900.10 Clacu10g2169 260793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2169 677 Pfam Mitochondrial carrier protein 564 654 IPR018108 -
Clacu10g2169 677 NCBIfam calcium/proton exchanger 71 419 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Clacu10g2169 677 Gene3D - 115 257 IPR044880 -
Clacu10g2169 677 Gene3D - 260 420 IPR044880 -
Clacu10g2169 677 FunFam Vacuolar cation/proton exchanger 264 420 - -
Clacu10g2169 677 Gene3D Mitochondrial carrier domain 559 677 IPR023395 -
Clacu10g2169 677 ProSiteProfiles Solute carrier (Solcar) repeat profile. 559 651 IPR018108 -
Clacu10g2169 677 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 421 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Clacu10g2169 677 Pfam Sodium/calcium exchanger protein 276 418 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2169 677 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g2169 677 PRINTS Mitochondrial carrier protein signature 564 577 IPR002067 GO:0055085(InterPro)
Clacu10g2169 677 PRINTS Mitochondrial carrier protein signature 577 591 IPR002067 GO:0055085(InterPro)
Clacu10g2169 677 PRINTS Mitochondrial carrier protein signature 626 646 IPR002067 GO:0055085(InterPro)
Clacu10g2169 677 SUPERFAMILY Mitochondrial carrier 563 677 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0399 Clacu-Chr10:5040621 Clacu10g2169 Clacu-Chr10:34830172 5.80E-92 dispersed
Clacu04g0760 Clacu-Chr4:21906277 Clacu10g2169 Clacu-Chr10:34830172 1.20E-64 transposed
Clacu10g2169 Clacu-Chr10:34830172 Clacu03g0077 Clacu-Chr3:955976 1.10E-118 wgd
Clacu10g2169 Clacu-Chr10:34830172 Clacu04g0759 Clacu-Chr4:21896479 1.30E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2169 K07300 - csv:101213176 647.506