Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2174 ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTGTGTTGGATCCTGAAGTTGACCTCCCTCAAGTCCCAACCATATCACATTATTTAACTGTCCTGTCCTTGGCTCCAGCAGTAGCAGCTGTAGCTTCAGTACATTGCGCTTCCCCAGCCACAGGCAACAGCTCATCAGCTAGACAGCCACCTAACTTATCGACAAAAAGCCAGCAAGAGTTCAGGCTTCTTGATTGCTTTGTCGACCCAGCTTTATCAAGCCCAAATATTCGTAAGGATCCAGGACCATTATGTCGACATGTTGGGCTTCGTGCGTAG 951 46.9 MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSVLDPEVDLPQVPTISHYLTVLSLAPAVAAVASVHCASPATGNSSSARQPPNLSTKSQQEFRLLDCFVDPALSSPNIRKDPGPLCRHVGLRA 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34875109 34879164 + ClG42_10g0217400.10 Clacu10g2174 260798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2174 316 SUPERFAMILY FYVE/PHD zinc finger 177 223 IPR011011 -
Clacu10g2174 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 228 IPR013083 -
Clacu10g2174 316 PANTHER CPG BINDING PROTEIN 8 226 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu10g2174 316 MobiDBLite consensus disorder prediction 164 179 - -
Clacu10g2174 316 Pfam Alfin 11 136 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu10g2174 316 CDD PHD_AL_plant 187 226 IPR044104 -
Clacu10g2174 316 MobiDBLite consensus disorder prediction 136 179 - -
Clacu10g2174 316 Pfam PHD-finger 188 223 IPR019787 -
Clacu10g2174 316 MobiDBLite consensus disorder prediction 147 163 - -
Clacu10g2174 316 FunFam PHD finger alfin-like protein 180 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2174 K26274 - - csv:101211970 431.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0742 Clacu-Chr10:10688840 Clacu10g2174 Clacu-Chr10:34875109 1.90E-73 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu11g0303 Clacu-Chr11:2748373 3.30E-78 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu07g0425 Clacu-Chr7:4965003 2.00E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0742 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Clacu11g0303 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Clacu08g1146 . 143 388 Alfin-like Transcription Factor Family AT1G14510 69.5 1.4e-92 336.3
Clacu09g0089 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 2.4e-92 335.5
Clacu07g0425 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.3e-77 286.6
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT1G14510 58.5 2.5e-73 272.3
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT5G26210 73.0 1.9e-100 362.5
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 1.5e-97 352.8
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT5G26210 55.4 2.2e-72 269.2
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.1 4.9e-101 364.4
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 8.0e-96 347.1
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT3G42790 69.3 1.4e-92 336.3
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.3e-81 298.5
Clacu10g2174 . 9 226 Alfin-like Transcription Factor Family AT3G42790 56.6 2.4e-71 265.8
Clacu07g0425 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Clacu10g2174 . 6 226 Alfin-like Transcription Factor Family AT5G05610 74.3 9.1e-97 350.1
Clacu11g0303 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Clacu09g0089 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Clacu08g1146 . 142 373 Alfin-like Transcription Factor Family AT5G05610 66.4 8.6e-87 317.0
Clacu10g0742 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Clacu07g0425 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Clacu10g2174 . 44 226 Alfin-like Transcription Factor Family AT3G11200 75.4 1.9e-78 289.3
Clacu09g0089 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Clacu11g0303 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Clacu08g1146 . 178 373 Alfin-like Transcription Factor Family AT3G11200 65.8 1.9e-70 262.7
Clacu10g0742 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Clacu10g0742 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Clacu11g0303 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Clacu08g1146 . 135 292 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Clacu09g0089 . 5 160 Alfin-like Transcription Factor Family AT2G02470 75.3 1.4e-63 240.0
Clacu10g2174 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.5e-54 208.4
Clacu07g0425 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.0e-53 207.2
Clacu08g1146 . 135 301 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Clacu11g0303 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Clacu09g0089 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 9.2e-68 253.4
Clacu10g0742 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Clacu07g0425 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Clacu10g2174 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48580 PF12165 Alfin 1.20E-66 No_clan Clacu TR