Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2174 ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTGTGTTGGATCCTGAAGTTGACCTCCCTCAAGTCCCAACCATATCACATTATTTAACTGTCCTGTCCTTGGCTCCAGCAGTAGCAGCTGTAGCTTCAGTACATTGCGCTTCCCCAGCCACAGGCAACAGCTCATCAGCTAGACAGCCACCTAACTTATCGACAAAAAGCCAGCAAGAGTTCAGGCTTCTTGATTGCTTTGTCGACCCAGCTTTATCAAGCCCAAATATTCGTAAGGATCCAGGACCATTATGTCGACATGTTGGGCTTCGTGCGTAG 951 46.9 MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSVLDPEVDLPQVPTISHYLTVLSLAPAVAAVASVHCASPATGNSSSARQPPNLSTKSQQEFRLLDCFVDPALSSPNIRKDPGPLCRHVGLRA 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34875109 34879164 + ClG42_10g0217400.10 Clacu10g2174 260798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2174 316 SUPERFAMILY FYVE/PHD zinc finger 177 223 IPR011011 -
Clacu10g2174 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 228 IPR013083 -
Clacu10g2174 316 PANTHER CPG BINDING PROTEIN 8 226 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu10g2174 316 MobiDBLite consensus disorder prediction 164 179 - -
Clacu10g2174 316 Pfam Alfin 11 136 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu10g2174 316 CDD PHD_AL_plant 187 226 IPR044104 -
Clacu10g2174 316 MobiDBLite consensus disorder prediction 136 179 - -
Clacu10g2174 316 Pfam PHD-finger 188 223 IPR019787 -
Clacu10g2174 316 MobiDBLite consensus disorder prediction 147 163 - -
Clacu10g2174 316 FunFam PHD finger alfin-like protein 180 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0742 Clacu-Chr10:10688840 Clacu10g2174 Clacu-Chr10:34875109 1.90E-73 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu11g0303 Clacu-Chr11:2748373 3.30E-78 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu07g0425 Clacu-Chr7:4965003 2.00E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48580 PF12165 Alfin 1.20E-66 No_clan Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2174 K26274 - csv:101211970 431.024