Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2177 ATGGAAGGCCATAATCCTCATCCTCATCCTCATCCCCATCCCCTTATTCAGCTCCACCAGCAGCAACAAATTCAACTTCCTCCCCCACCGCCGCATCTCCACCAGAGCCTCGCCGTCTCCGCCGATCAAACCACAGCAACAGCCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGACGATCAGAGCCGAGCTGGATCAAACCTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACTGCCTCCAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGTTACAAGCAATATTTGGGGCAAGAATGCAAAGAATATTATGGGCAGAGGCGGAGAGCGGCGGTAGCGGGTCGAAGAAGAAGACGTTACCATTATCGTCTGACGATGACGAAGAAAACGACGATAGCGATGGCGATGGAGGCGAGGCAAAAGTTAGCGGTAGGAAGAGGAAAAAAGTTAAAGGAATGGGCGGTACGACGACGGGAGGCGGCGAGGGCAGTGGAAAGAGTAGTATCAATGATTTGAAAGAAATGTTGGAAGATTTTATGAATCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAATGGAGAAGAAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGCGAGAAAGAGAAGAACAAAGGAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA 915 45.25 MEGHNPHPHPHPHPLIQLHQQQQIQLPPPPPHLHQSLAVSADQTTATAADRFPQWSIQETKEFLTIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMQRILWAEAESGGSGSKKKTLPLSSDDDEENDDSDGDGGEAKVSGRKRKKVKGMGGTTTGGGEGSGKSSINDLKEMLEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34922273 34923364 + ClG42_10g0217700.10 Clacu10g2177 260801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2177 304 Gene3D - 55 116 - -
Clacu10g2177 304 Pfam Myb/SANT-like DNA-binding domain 54 138 IPR044822 -
Clacu10g2177 304 Coils Coil 248 275 - -
Clacu10g2177 304 MobiDBLite consensus disorder prediction 152 212 - -
Clacu10g2177 304 Coils Coil 212 232 - -
Clacu10g2177 304 FunFam Zinc finger and SCAN domain-containing 20 55 116 - -
Clacu10g2177 304 CDD GT1 53 118 - -
Clacu10g2177 304 ProSiteProfiles Myb-like domain profile. 55 111 IPR001005 -
Clacu10g2177 304 PANTHER FI21293P1 28 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1134 Clacu-Chr7:25965787 Clacu10g2177 Clacu-Chr10:34922273 2.40E-24 transposed
Clacu10g2177 Clacu-Chr10:34922273 Clacu04g0756 Clacu-Chr4:21821410 5.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48581 PF13837 Myb_DNA-bind_4 2.20E-18 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2177 - - - 0.0