Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2204 ATGGGAAAAAGCCACAACCCTCTGAGTGAATTTCAGGTGCACCCACTTCAGTTCATGCAGATTCTTGCACCGAAAACAGCTGATTGGTGCTCCAAATCACCAAATACGAACAGAAAATTCAAGAATCAACAATGGAAAAGCTGTTCTTCATACCTCATTGCTCTCTTTTTTGCTCATCTTTTGGCTGTTTCCCTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCACGAACTCATCGATCTAAAAGGAGCTTTGCATGGCTGGAATGGCAGCAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGCCAGGTTATCGCTATACAGCTTCCATGGAAGGCTCTTGCTGGCCGGATTTCCGACAGGATTGGACAGCTCCGGGAACTTCGGAAACTCAGCCTCCATGACAACATGATCTCCGGTGCGGTCCCTCGGTCCCTGGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACAATTGGTAACCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTACTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGCTTAGAGTTAATCTGAGTTACAATTCACTGTCGGGATCTATCCCAAGTAGTTTTACACAGTCGTTTTCTCTTATAATTCTTGCTCTTCAGCACAATAATATTTCTGGGACCGTCCCAGACTCTTGGGGAGGTCTTGGAAATAGAACTTGCCCACTTGGGGTTTTAACACTTGATCATAATGCTATATATGGAGCCATTCCAGCTTCTTTGAGTAAGTTGGAATGGCTTCAAGAGATTTCCATCGGGGACAATAAGATCTCTGGGGCTATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTCTGGATTTGTCAAACAACGCCATTAGTGGCGGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTCATTGAATGTTGAAAATAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAAATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACCTCTTTCAATGTCTCCTACAACAATCTCTCTGGCCCTGTTCCAGTTCTCCTATCGAATAAGTTCAACGTGAGCTCTTTCTTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACAACTCCATCAACTGAGGTACTGAAACCGCATCGCCACCGCAGACTTAGTCTGAAGGACATAATTCTGATAGCTGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGGAAACTGCTGCGAGAAGCATCGAGAAGGCAGCACCAGGCAGCACCGATGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCAGATGACCTTTTGTGTGCGACTGCGGAGATCATGGGCAAAAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGAAATGAAGTTGCGGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTTGAAGCCGAAGTTGCAGCACTCGGAAAGATTAGACATCCGAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCCAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGACCGGAAACCACAGTTGATTGGCCAACGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGACGATCAGACCAATGCTCGTATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAACCACATCAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACAGGAAAGTCTCCTGGAGAACCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACCCAAAATATTGGTGATGAACTGTTGAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCATCACCAGCTGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAAATTAATGCTTCTACTTCCGGTGACGATGGTTTCAAAAACCAACCAGCAAATGAATAG 2574 44.48 MGKSHNPLSEFQVHPLQFMQILAPKTADWCSKSPNTNRKFKNQQWKSCSSYLIALFFAHLLAVSLRPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHGWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNMISGAVPRSLGFLPNLRGVYLFNNRLSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLLRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGLGNRTCPLGVLTLDHNAIYGAIPASLSKLEWLQEISIGDNKISGAIPSEIGRLKRLRLLDLSNNAISGGFPSSFSNLSSLESLNVENNRLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNVSSFLGNLQLCGFSTSTPCLPASSPHNITTPSTEVLKPHRHRRLSLKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAAKETAARSIEKAAPGSTDVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFEAEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTSKTDVYSLGVIILELLTGKSPGEPMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEINASTSGDDGFKNQPANE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35105597 35108362 - ClG42_10g0220400.10 Clacu10g2204 260828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2204 857 FunFam Leucine-rich repeat receptor-like kinase 82 188 - -
Clacu10g2204 857 FunFam Pollen receptor-like kinase 1 646 851 - -
Clacu10g2204 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Clacu10g2204 857 CDD STKc_IRAK 575 840 - -
Clacu10g2204 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 272 338 - -
Clacu10g2204 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2204 857 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515(InterPro)
Clacu10g2204 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2204 857 PRINTS Leucine-rich repeat signature 196 209 - -
Clacu10g2204 857 PRINTS Leucine-rich repeat signature 317 330 - -
Clacu10g2204 857 Gene3D Transferase(Phosphotransferase) domain 1 647 853 - -
Clacu10g2204 857 Gene3D Ribonuclease Inhibitor 81 190 IPR032675 -
Clacu10g2204 857 FunFam Leucine-rich repeat receptor protein kinase EMS1 189 271 - -
Clacu10g2204 857 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Clacu10g2204 857 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Clacu10g2204 857 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Clacu10g2204 857 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Clacu10g2204 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Clacu10g2204 857 Gene3D Ribonuclease Inhibitor 191 276 IPR032675 -
Clacu10g2204 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 284 845 IPR052451 -
Clacu10g2204 857 SUPERFAMILY L domain-like 115 461 - -
Clacu10g2204 857 FunFam Leucine-rich repeat receptor-like protein kinase 555 645 - -
Clacu10g2204 857 Pfam Leucine Rich repeats (2 copies) 170 207 IPR025875 -
Clacu10g2204 857 Gene3D Ribonuclease Inhibitor 277 462 IPR032675 -
Clacu10g2204 857 SMART LRR_typ_2 413 436 IPR003591 -
Clacu10g2204 857 SMART LRR_typ_2 145 168 IPR003591 -
Clacu10g2204 857 SMART LRR_typ_2 341 365 IPR003591 -
Clacu10g2204 857 SMART LRR_typ_2 317 340 IPR003591 -
Clacu10g2204 857 SMART LRR_typ_2 169 192 IPR003591 -
Clacu10g2204 857 SMART LRR_typ_2 193 217 IPR003591 -
Clacu10g2204 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
Clacu10g2204 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1458 Clacu-Chr3:28125825 Clacu10g2204 Clacu-Chr10:35105597 6.60E-56 dispersed
Clacu07g0483 Clacu-Chr7:5942025 Clacu10g2204 Clacu-Chr10:35105597 3.50E-159 dispersed
Clacu09g0913 Clacu-Chr9:8505839 Clacu10g2204 Clacu-Chr10:35105597 6.70E-68 dispersed
Clacu10g2204 Clacu-Chr10:35105597 Clacu11g0407 Clacu-Chr11:3813284 3.80E-73 dispersed
Clacu10g2204 Clacu-Chr10:35105597 Clacu06g1126 Clacu-Chr6:21347586 1.30E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73926 PF07714 PK_Tyr_Ser-Thr 1.50E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2204 - - - 0.0