Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2214 ATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCTACTTCTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATACGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGATTTACGATCCATCTTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGAGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATGCCGGTGAGGCCGTCTGCCATCGGTAGTCATTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATTGGAGCAGAAGCATCATCATTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG 1356 45.94 MEVPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTSGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAIYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCEGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPMPVRPSAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35149086 35151687 + ClG42_10g0221400.10 Clacu10g2214 260838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2214 451 Gene3D WRKY domain 132 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 MobiDBLite consensus disorder prediction 195 274 - -
Clacu10g2214 451 FunFam WRKY transcription factor 135 205 - -
Clacu10g2214 451 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 359 IPR044810 GO:0003700(InterPro)
Clacu10g2214 451 SMART WRKY_cls 145 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 SMART WRKY_cls 294 353 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 MobiDBLite consensus disorder prediction 204 251 - -
Clacu10g2214 451 ProSiteProfiles WRKY domain profile. 140 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 Gene3D WRKY domain 281 347 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 Pfam WRKY DNA -binding domain 146 201 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 Pfam WRKY DNA -binding domain 296 352 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 SUPERFAMILY WRKY DNA-binding domain 142 204 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 SUPERFAMILY WRKY DNA-binding domain 286 354 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 ProSiteProfiles WRKY domain profile. 289 354 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g2214 451 MobiDBLite consensus disorder prediction 252 274 - -
Clacu10g2214 451 FunFam WRKY transcription factor 33 281 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g2214 Clacu-Chr10:35149086 Clacu11g0604 Clacu-Chr11:5823888 7.00E-66 dispersed
Clacu02g1968 Clacu-Chr2:33198552 Clacu10g2214 Clacu-Chr10:35149086 2.60E-76 transposed
Clacu03g0017 Clacu-Chr3:374997 Clacu10g2214 Clacu-Chr10:35149086 9.90E-89 transposed
Clacu10g2214 Clacu-Chr10:35149086 Clacu02g0209 Clacu-Chr2:2011659 6.20E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48582 PF03106 WRKY 8.90E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2214 K13424 - csv:101205651 801.971