Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2232 ATGCGTTTTAGATGCTTGTTCAACTATGGAAATAAGAATCAAGTTCCAGAGTCCAAGTTAGATAAAGACCCCATGGATTTTTGTTATTGCTTTCTTTTCTCGCGGATAAAGTTTCCTCGGAAATTTTGGCGTCAACTATGTTCTACTGATTGCAAACCAGGAAATGTGAATGACTGTATGAGTTGTAACGAGAAGAATAGAGGGGTAGATGATAGGGAAACTGAGCAGCCAGTTTTTAGGAACTCTGTCGAGGCACAACGGATACCAGCCATCCAGAATGGATCCATAACGGCCCAACAGTTGACGATTGATGATAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGTGAGGGTGCTCACGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCTCTTGAAAATCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTCAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTGCATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATCTGTTGCTTACTGCAAATCAAAGATCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCTGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGTGACATACCTCCCGATTTAGCATTTATAGTACAGTCGTGTTGGGTCGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTGTTTACACTCCCAACTCCTTCACCATCTTCACCATCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATGA 1308 43.2 MRFRCLFNYGNKNQVPESKLDKDPMDFCYCFLFSRIKFPRKFWRQLCSTDCKPGNVNDCMSCNEKNRGVDDRETEQPVFRNSVEAQRIPAIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPTPSPSSPSSPKSDTTETATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35290419 35294168 + ClG42_10g0223200.10 Clacu10g2232 260856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2232 435 CDD STKc_MAP3K-like 120 375 - -
Clacu10g2232 435 PANTHER SERINE-THREONINE PROTEIN KINASE 93 376 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu10g2232 435 FunFam Kinase suppressor of Ras 1 103 193 - -
Clacu10g2232 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 Pfam Protein tyrosine and serine/threonine kinase 116 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 MobiDBLite consensus disorder prediction 385 409 - -
Clacu10g2232 435 ProSiteProfiles Protein kinase domain profile. 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 FunFam serine/threonine-protein kinase HT1 195 396 - -
Clacu10g2232 435 SUPERFAMILY Protein kinase-like (PK-like) 113 404 IPR011009 -
Clacu10g2232 435 SMART serkin_6 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 ProSitePatterns Protein kinases ATP-binding region signature. 120 141 IPR017441 GO:0005524(InterPro)
Clacu10g2232 435 Gene3D Transferase(Phosphotransferase) domain 1 197 406 - -
Clacu10g2232 435 Gene3D Phosphorylase Kinase; domain 1 102 193 - -
Clacu10g2232 435 PRINTS Tyrosine kinase catalytic domain signature 190 203 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 PRINTS Tyrosine kinase catalytic domain signature 346 368 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2232 435 PRINTS Tyrosine kinase catalytic domain signature 228 246 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1974 Clacu-Chr9:34605951 Clacu10g2232 Clacu-Chr10:35290419 2.70E-114 dispersed
Clacu10g1370 Clacu-Chr10:26782601 Clacu10g2232 Clacu-Chr10:35290419 6.30E-115 dispersed
Clacu10g2232 Clacu-Chr10:35290419 Clacu11g1310 Clacu-Chr11:22301673 1.30E-64 dispersed
Clacu10g2232 Clacu-Chr10:35290419 Clacu06g1845 Clacu-Chr6:28974531 4.20E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73927 PF07714 PK_Tyr_Ser-Thr 9.60E-62 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2232 - - - 0.0