Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2240 ATGCTTTTCAAACTATTCCTCATTCTTGTCCTAGCTCTAGCTCCTGCTTCCGTTTCTGCTTTGGACACTGTTTTCAACGACGACGTTTTGGGATTGATAGTGTTCAAAGCTGGCCTTCAAGACCCTATGGGTAAATTGGTCACATGGAACGAAGACGATGAAACTCCCTGCAATTGGTTTGGTGTCAAATGCAATCCTAATACCAATAGGGTCTCTGAGCTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATTGATCGTGGACTCCTAAGGTTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACCATCAACTCTGCTCTTTCACACCTTGTAAATTTGCAAGTCATTGATTTCAGTGACAACAGTTTATCTGGACCCATTCCTGAACAGCTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAACATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGATTCTTAACTTCTCCTCCAACCACCTTTCTGGAAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGCTTCAGTCTCTGGATTTCTCTAACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGATTGTCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTACTTCTAAAATCAATCGATTTTAGTGAGAATATCCTTTCGGGTGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCCAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTGCTGAAGAAGTTTAATGTATCCACGAACTATTTAACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCATTTGACTGGCAATCTCCCTACATGGATCTTTCGGGAAGCTATGCCAACTGTTCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCAGCCCCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAACATATCCAGAAACCATCTCGTGGGTTCTATTCCGGGGAGCATTGGTGAACTAAAATCAGCATATGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGCATCCCTGCTGAAATTGGAGGAGCGATCTCACTCAAGGAGTTGAGGCTGAAGAAGAACTCCCTCACTGGGGAAATCCCAGTCAACATTGACAAATGCTCCTTGTTAACGTCATTGATTCTTTCTCACAACAACCTAACAGGCTCAATTCCTGCTTCCGTTGCAAACCTCTCCAACCTTGAAGATGTAGACTTGTCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTCAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCTGTCCATCCAAAACCGATTGTCCTAAACCCAAATTCTTCTGATACCAATGGAAATTCCCCCTCCCACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATAATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCAGAGCAAGGTCCTCACAGTCACGGTCTGCTGCTCTTGTATTGTCTGCCGGGGAGGACTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCATCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTTGGTCGAGGTGGATTTGGGGTTGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGTTGACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGATGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAGTATTATTCACTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTAGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCAATCGAACTTCCGTATTGAAGAGGCCATTCCTGTAATGAAACTAGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCAGACATGAATGAGGTGGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGTTGACGAGGAGTTGGAATGA 2883 43.46 MLFKLFLILVLALAPASVSALDTVFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPNTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLVNLQVIDFSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGLQSLDFSNNLLEGQIPPGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQLLKKFNVSTNYLTGNLPESMANCNNLLSIDASHNHLTGNLPTWIFREAMPTVPFSSYRLGENLSSPAPFQGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGSIGELKSAYALDFSDNQLNGSIPAEIGGAISLKELRLKKNSLTGEIPVNIDKCSLLTSLILSHNNLTGSIPASVANLSNLEDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSAGEDFSCSPKTNPDYGKLIMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWRQRFKIVLGMAKGLAYLHHNSIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVEQCVDERLQSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35341536 35344724 - ClG42_10g0224000.10 Clacu10g2240 260864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2240 960 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 26 304 - -
Clacu10g2240 960 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 671 753 - -
Clacu10g2240 960 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 478 499 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 501 523 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 95 116 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 405 427 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 382 403 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 Pfam Leucine Rich Repeat 265 285 IPR001611 GO:0005515(InterPro)
Clacu10g2240 960 SMART LRR_typ_2 213 237 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 92 115 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 116 140 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 403 427 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 189 212 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 523 547 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 499 522 IPR003591 -
Clacu10g2240 960 SMART LRR_typ_2 285 309 IPR003591 -
Clacu10g2240 960 Gene3D Ribonuclease Inhibitor 368 572 IPR032675 -
Clacu10g2240 960 SUPERFAMILY L domain-like 43 352 - -
Clacu10g2240 960 Gene3D Ribonuclease Inhibitor 279 362 IPR032675 -
Clacu10g2240 960 Gene3D Phosphorylase Kinase; domain 1 667 753 - -
Clacu10g2240 960 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Clacu10g2240 960 Pfam Protein tyrosine and serine/threonine kinase 679 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2240 960 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Clacu10g2240 960 SUPERFAMILY RNI-like 254 561 - -
Clacu10g2240 960 CDD STKc_IRAK 683 949 - -
Clacu10g2240 960 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 305 573 - -
Clacu10g2240 960 ProSiteProfiles Protein kinase domain profile. 677 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2240 960 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524(InterPro)
Clacu10g2240 960 SUPERFAMILY Protein kinase-like (PK-like) 680 949 IPR011009 -
Clacu10g2240 960 Gene3D Ribonuclease Inhibitor 176 278 IPR032675 -
Clacu10g2240 960 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Clacu10g2240 960 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 947 IPR050647 -
Clacu10g2240 960 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 754 955 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0530 Clacu-Chr7:6831943 Clacu10g2240 Clacu-Chr10:35341536 1.20E-165 dispersed
Clacu07g1588 Clacu-Chr7:30504029 Clacu10g2240 Clacu-Chr10:35341536 9.60E-23 dispersed
Clacu10g0324 Clacu-Chr10:4191880 Clacu10g2240 Clacu-Chr10:35341536 1.10E-83 dispersed
Clacu10g2240 Clacu-Chr10:35341536 Clacu11g1898 Clacu-Chr11:30011244 1.60E-51 dispersed
Clacu10g2240 Clacu-Chr10:35341536 Clacu11g0710 Clacu-Chr11:6968293 2.70E-184 wgd
Clacu10g2240 Clacu-Chr10:35341536 Clacu02g0151 Clacu-Chr2:1523965 2.00E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73929 PF07714 PK_Tyr_Ser-Thr 1.10E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2240 - - - 0.0