Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2251 ATGAAAGTCTGGAACAACAATCCCATCTCTCCCCCGAGGTCTGCCACTGTTGCTGTCACTGTCACTGTCAATTCTACAACTACAACAACCATTGCAACAGTGATTTGTCCATTTTTCGCTCTTTGCCACACCAAACTAAGTGGAGTCGAGATGGGCAACTGCGGTACTAGAGAAGAGTCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTCGTCTTCCATGGCTGTGAAAAACGCCAACAACAATGCTACAGATAAAAGGCACATTCATAACCGGTCCATATCAGATCTAAGCGATCCTTCAACCCCTCGCAACCTCGAGGACTTTAGAAAGAATTCGGTGCTTTACACACATGTTATCGCCTTCACATTATACGAGCTGGAGACGATCACCAAGAGTTTCCGCTCCGATTACATTCTCGGAGAGGGCGGTTTTGGAACTGTTTATAAAGGCTACATTGATGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTCGCTGTCAAGGTTCTCAACAAGGAAGGCCTCCAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACATCCGAACCTTGTCAAGTTGATTGGTTACTGCTGCGAGGATGATCACCGATTACTTGTCTATGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCGTTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCGGCCAAGGGACTTGCTTTCCTTCATAATGCTGAACGGCCCGTTATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTACACAGCTAAGCTCTCTGATTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACGCATGTTTCTACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGGCACTTGACAGCAAGGAGTGATGTATACAGTTTCGGCGTTGTTCTTCTGGAGCTTTTGACGGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAACTAAATGACAAGAGGAAGTTGCTACAAATAATTGACCCTAGATTGGAAAGTCAATACTCGATAAGGGCAGCACAGAAGGCCTGCAGCCTAGCGTACTATTGCCTGAGCCAGAATCCAAAAGCAAGACCATTAATGAGCGATGTTGTTGAAACTCTGGAACCATTGCAGAGCGGTACCGATGCAATTGAATATTCATCAACGGGAACTAGTCCATTTGTTAGGGGTGGCGTCCCTGATTACAGGATGCGGCAAAGGTTTATCGACAATGTTGGTTCGGGGGCTAGTTGCCGGTCTCCTAACCCCAACTGTTCCCCGAGCGGCCCTGCTGCATGTAGGGTTAGATGA 1431 46.68 MKVWNNNPISPPRSATVAVTVTVNSTTTTTIATVICPFFALCHTKLSGVEMGNCGTREESAVVSNAQVQQLHTSSSMAVKNANNNATDKRHIHNRSISDLSDPSTPRNLEDFRKNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLESQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGTDAIEYSSTGTSPFVRGGVPDYRMRQRFIDNVGSGASCRSPNPNCSPSGPAACRVR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35413049 35429933 + ClG42_10g0225100.10 Clacu10g2251 260875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2251 476 Pfam Protein kinase domain 141 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2251 476 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Clacu10g2251 476 Gene3D Phosphorylase Kinase; domain 1 101 219 - -
Clacu10g2251 476 PANTHER OS01G0588500 PROTEIN-RELATED 112 418 IPR050823 -
Clacu10g2251 476 FunFam Serine/threonine-protein kinase BIK1 103 219 - -
Clacu10g2251 476 FunFam Probable serine/threonine-protein kinase PBL8 220 432 - -
Clacu10g2251 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2251 476 ProSiteProfiles Protein kinase domain profile. 137 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2251 476 Gene3D Transferase(Phosphotransferase) domain 1 220 430 - -
Clacu10g2251 476 ProSitePatterns Protein kinases ATP-binding region signature. 143 172 IPR017441 GO:0005524(InterPro)
Clacu10g2251 476 CDD STKc_IRAK 143 417 - -
Clacu10g2251 476 MobiDBLite consensus disorder prediction 84 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1128 Clacu-Chr7:25918254 Clacu10g2251 Clacu-Chr10:35413049 6.00E-120 dispersed
Clacu09g0107 Clacu-Chr9:985164 Clacu10g2251 Clacu-Chr10:35413049 1.90E-105 dispersed
Clacu10g2251 Clacu-Chr10:35413049 Clacu11g0291 Clacu-Chr11:2663138 3.40E-127 dispersed
Clacu03g1505 Clacu-Chr3:28629813 Clacu10g2251 Clacu-Chr10:35413049 3.80E-129 transposed
Clacu11g1315 Clacu-Chr11:22418854 Clacu10g2251 Clacu-Chr10:35413049 2.00E-126 transposed
Clacu10g2251 Clacu-Chr10:35413049 Clacu02g0132 Clacu-Chr2:1367315 7.20E-56 wgd
Clacu10g2251 Clacu-Chr10:35413049 Clacu04g0683 Clacu-Chr4:20783621 1.20E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73930 PF00069 Pkinase 9.90E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2251 - - - 0.0