Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g2252 ATGAAGAAACCAGGGTCAGATCGACGTACCCGCGCTGTTGCTGCAGAAGTTTCATCGAGTTTCTTTGATAAGCGAAACTCGGAAACTGTGGCCATGTCACCTGTGCAAACGCTGCTACTTTTCGCTTTCTTCTACGCTGGAATCGACACAACCGGTTCTTTCACTGATCCCCGCGATTCTGCGGCGCTGGAATCCCTGAAAAACGAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGAAGGAGTGGCTTGCATCAATTCAAGAGTCACGGCACTGAGATTATCAACTATGGGCCTGAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAGTTTGAGTATCTTGATCCTGGCTGGGTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCCAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTCACTGGTTCCATACCGCCATCTCTGGGGAAACTCTCCAATCTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCCAATCTTCTGGTTTGGACCTCCTTCTGAAGGCTAAACATTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAATAATTTTTCTGGGAATATCCCACCGACACTGGGACTTGTTAAGACCCTTGAGGTTCTTCGCCTAGATCGGAATTCTCTGACAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTACTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCACCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATCATTGAATTTGGGTCAATTCGAGGACCTGTGCCAGAAGGAGTGTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAATAATGCATTTAGTGACACATTTAATATGGGTGACAAAGTCAGCGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCCATTTTACCCTTGGTTCAAGATACACCAAAACTTTGATGCTTATAGGGAATCCTGTGTGTAGCACTGATGCTACCCTCTCAAATACAAACTACTGCCAAGTTCAAAATCAACCGGTGAAACCCTATTCAACCAGCCTTGCCAGTTGTTTAAGTAAGTCATGTTCTCCAGATGAGAAGTTAAGTCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTTCATTCTTTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACACCGGGTTCAGTTTCTATTCAAAACCCTTTCTTCAATGTTGATGATTATCTTCAGATGCAAATTGCACTTTTTCCACCAGACGGAAAGTATTTTAATAGGTCAGATATTCAGAGGATTGGGTTTGACTTGAGCAATCAAACCTACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGGTTTTGCAGGCACGGCTAGGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCATTCTAGGCCTCATCGGAGTTGGAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGGATGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGATAGTGGGGGCGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGGTAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACTCTGAGAGATAGCCTATCTGGAAAATCTGGTATCAATCTTGACTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTGCATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTTTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGCGAAAAGGGACACGTTTCTACTCAAGTTAAAGGGACATTGGGTTATTTGGATCCCGAATATTACATGACTCAACAATTGACGGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAATTATTAACGGCTAAGCTGCCTATCGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGCATGTTGATGAATAAAAGTGAAGAAGAATATTATGGTCTGAAGCAGATAGTGGATGTAACCATAATAAATAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTGTAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGAATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCTCCTAGGCATCCCTATAATGATTCTATACCAAAAAAGGATGCTAATGACAGCAATGCTTTTGATTACAGTGGTGGATACACTCATTCGACAAAAGTGGAGCCCAAATAG 2994 42.32 MKKPGSDRRTRAVAAEVSSSFFDKRNSETVAMSPVQTLLLFAFFYAGIDTTGSFTDPRDSAALESLKNEWQNTPPSWGASNDPCGAPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQSLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGSIPPSLGKLSNLYWLDLADNQLTGSLPVSTSQSSGLDLLLKAKHFHFNKNQLSGSISPKLFSSEMVLIHILFDGNNFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYLDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSIRGPVPEGVFSLPQIQQIKLKNNAFSDTFNMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDATLSNTNYCQVQNQPVKPYSTSLASCLSKSCSPDEKLSPQSCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQIALFPPDGKYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAGTARGTSISPGVIIGVAIGCAFLILGLIGVGIYAIRQKKRAEKAIGMSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIVDVTIINNTTTIIGLGRFLELAMQCVEESAVDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDSIPKKDANDSNAFDYSGGYTHSTKVEPK 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35437174 35445889 + ClG42_10g0225200.10 Clacu10g2252 260876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g2252 997 Gene3D Ribonuclease Inhibitor 250 314 IPR032675 -
Clacu10g2252 997 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524(InterPro)
Clacu10g2252 997 FunFam Leucine-rich repeat family protein 58 214 - -
Clacu10g2252 997 SUPERFAMILY L domain-like 72 442 - -
Clacu10g2252 997 PANTHER RECEPTOR-LIKE PROTEIN 55 70 934 - -
Clacu10g2252 997 Pfam Protein tyrosine and serine/threonine kinase 664 932 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2252 997 Gene3D Phosphorylase Kinase; domain 1 636 737 - -
Clacu10g2252 997 MobiDBLite consensus disorder prediction 943 958 - -
Clacu10g2252 997 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 738 950 - -
Clacu10g2252 997 SUPERFAMILY Protein kinase-like (PK-like) 647 947 IPR011009 -
Clacu10g2252 997 FunFam Leucine-rich repeat protein kinase family protein 631 737 - -
Clacu10g2252 997 Gene3D Ribonuclease Inhibitor 56 249 IPR032675 -
Clacu10g2252 997 Gene3D Transferase(Phosphotransferase) domain 1 738 961 - -
Clacu10g2252 997 ProSiteProfiles Protein kinase domain profile. 662 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2252 997 Gene3D Ribonuclease Inhibitor 315 454 IPR032675 -
Clacu10g2252 997 Pfam Leucine Rich Repeat 320 343 IPR001611 GO:0005515(InterPro)
Clacu10g2252 997 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
Clacu10g2252 997 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Clacu10g2252 997 Pfam Leucine Rich Repeat 274 295 IPR001611 GO:0005515(InterPro)
Clacu10g2252 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g2252 997 SMART serkin_6 662 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g2252 997 FunFam Predicted protein 217 437 - -
Clacu10g2252 997 CDD STKc_IRAK 668 936 - -
Clacu10g2252 997 MobiDBLite consensus disorder prediction 943 997 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0402 Clacu-Chr8:5297484 Clacu10g2252 Clacu-Chr10:35437174 7.40E-60 dispersed
Clacu10g1313 Clacu-Chr10:26166444 Clacu10g2252 Clacu-Chr10:35437174 0.00E+00 dispersed
Clacu10g2252 Clacu-Chr10:35437174 Clacu11g0675 Clacu-Chr11:6517974 1.40E-71 dispersed
Clacu02g0002 Clacu-Chr2:74882 Clacu10g2252 Clacu-Chr10:35437174 3.10E-214 transposed
Clacu10g2252 Clacu-Chr10:35437174 Clacu04g0672 Clacu-Chr4:20638022 3.90E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73931 PF07714 PK_Tyr_Ser-Thr 9.00E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g2252 - - - 0.0