Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0152 ATGGTTAAGGCTGCGGCAACTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTCATTCTATAGGTGGAACATTAGAGGAAAAATGCGAAAAGAATTCGATAGCAATAAGCCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATAGTGGAGATAACAAACCAATGCAGGAACAATTGCAGCATCTACGATTTGCATTTGAAATGTGGATCATTCAGCTCAGCCAAGTTAATAAACCCTCGAATCTTCAAGCGCATTGCGGTCGATGATTGTCTTATCAACAATGGAAGACCCATCCCTCCAGGAATTACTCTTTCTTTTCAATATGCTACTAACTTTCAGTTTCCACTTTCGGTTTCCTCTCTCAAATGTTTCATTGTGAGGAAGGATCTTCCTGCCTCTCAGTTCAGTTCATCATTATTTTCTTTATCTCTGTGTTTCGTGGGATTCTTTGTGAGTTTGCCGTCAACGGCCGCCCAGTTCGTGCCTCCGTTCACTCACCATCGTGCCGCCCACACCAATTTGCGTCCGTTCCAGATTCGCATTCGTTTCAACCAAATATTTTCCACAATGGTTATCAGCGAAGCCGTGGATGAGATGATGGCCGAAAGTGTTGATTCTTTCGGTGGAACATCCAGAGGTCCCAGGCTCTTCATTAAGGAAATGGTTTTGTGCAACTTCAAGTCCTACGCTGGGGAACAGCGCGTTGGACCCTTCCATAAGAGTTTTTCTGCGGTGGTTGGACCGAATGGCAGTGGAAAAAGTAATGTAATTGATGCCATGTTATTTGTCTTCGGAAAGCGAGCTAAACAGATGCGACTGAACAAAGTCTCGGAGCTAATTCATAATTCCGCCAATCACCAGAATTTAGAGAGTGCAAGTGTTTCAGTTCACTTCCAAGAAATAGTTGATTTGGACGATGGAGCATATGAAGCTGTTCCAGGAAGTGACTTTGTTATAACCAGGGCTGCCTTCCGTGATAACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAATTGAAGGGTAAAGGAGTTGACTTGGACAACAATCGTTTTCTAATTCTTCAGGGAGAAGTTGAGCAGATTTCACTGATGAAGCCAAAAGCACAAGGACCTCACGATGAGGGCTTTCTTGAATATCTTGAGGATATAATCGGAACCATCAAATATGTTGAAATGATTGAGGAGTCAAACAAGCAGCTAGAGTCCCTCAATGAGAAACGTACTGGTGTGGTTCAAATGGTTAAGTTAGCTGAGAAGGAAAGAGATGGCTTAGAGGAGGTGAAGAATGAAGCAGAAGCTTACATGCTGAAAGAATTATCACATTTAAAGTGGCGAGAGAAAGCCTCTAAACTAGCTCATGAGGATACTACAAAGAGAATAACTGAACTGCAAGATGAAGTGTCCACCTTAGAAGCAAATAAGAAAGCTGAGAGGGAAAAGATTCGTGAAACTAGCAAGGAGTTGAAGGAGCTTGAAACCGTGCATGAAAAAAATATGAAAAGAAAAGAGGAACTTGATAATGACTTGCGAAGATCCAAGGAAAAATTTAAGGACTTTGAACGTCAGGATGTTAAATATCGTGAGGATTTGAAGCACATAAAGCAAAAGATTAAGAAACTTGATGATAAGCTTGAAAAGGATTCTACAAAAATTGATGACTTAAAAAAGGAGTGTGAAGAATCAACAAGCTTGATTCCAAAGCTTGAGGAGAGTATTCCACAATTCCAAAAACTTCTCTCAGATGAGGAAAAGATCTTGGACGAGATTCAAGAGAGTTCAAAAGTTGAAACTGAGAGGTACCGCTCAGAGCTTGCAACAGTTCGTGTTGAATTAGAACCTTGGGAAAAGCAACTGACTGAGCACAAGGGGAAACTTGAAGTCGCATGTACTGAGAGCAAACTATTGAGTGAGAAGCATGAAGGTGGTCGTGCAACATTTGATGATGCTCGGAAGCAGATGGTTAACATACTGAAAAACATAGAAGAAAAGTCTTCGAACATTGAACAGATTAAAAATGAGCTTCAAAAGAGAAAACTGGAAACCTTGAAAGCGCAAGAAGAAGAACAAGAGTGTATCAAGGAACAAGAATCACTTATTCCTCTAGAACATGCTGCTAGGCAGAAGGTTGCAGAACTTAAGTCTGTTATGGATTCAGAGAAAAGTCAAGGATCGGTCCTTAAAGCAATTTTGAAGGCAAAGGAAAACAATCAGATTGAGGGTATATATGGGCGAATGGGCGATTTAGGTGCTATCGATGCGAAGTATGATGTTGCAATATCAACGGCTTGCCATGGACTTGATTATATTGTAGTGGAAACATCTGGTGCTGCACAAGCTTGTGTAGAATTACTGCGAAGGGAAAATCTTGGTGTTGCAACTTTCATGATATTGGAAAAGCAGGTTGATCATATGTCAAAGTTGAAGGCAAAGGTTAGCACTCCTGAGGGGGTTCCTCGCCTTTTTGATTTAATTAAGGTTCAGGATGATAGGATGAAGCTTGCCTTCTTTGCTGCATTGGGGAATACAGTTGTTGCTAAGGATCTTGAGCAGGCAACACGAATTGCATATGGTGGTAATAGAGATTTTCGACGTGTTGTAACTCTTGATGGTGCCCTGTTGGAAAAATCTGGAACCATGAGTGGCGGGGGACGTATGCCTCGTGGTGGTAAGATGGGTACATCAGTTCGATCTGTGAGTGTATCAAAAGAAGCATTTGTAAAAGCTGAGAAAGATCTCTTAGATATGGTTGATGCACTGAACAAAATCCGTCTAAGAATTGCTGATGCTGTGCAACGTCACCAAGTTTCAGAGAAAGCAGTGGAACAGTTGGAGATGTTATTAGCCAAAAGGCAACAGGAGATTGACAGTTTGACTTCACAACACAGCTATCTTGAAAAGCAATTAGGTTCTCTTGAGGCTGCATCGAAACCAAAAGATGATGAGATCAAGCGATTGCAGGAGCTGAGGAATTTTATCTTGGAAGAGGAAAAAGAGATCGATAGACTTATGCTAGGCTCCAAAAAGCTAACAGAGAAGGCATTAGAACTTCAGAGACAGATCGAAAATGCTGGTGGTGAAAGATTGAAAGCTCAAAAGTCTAAAGTGAATAAGATTCAATCTGACATTAACAAAACCATAACAGATATCAATCGCTATAAAGTTCAAATAGAATCAGGCGAAGCAACAATAAAGAAGTTGACAAAAGCTCTTGAAGATTCAAAAAAGGAGAAGGAACGGCTTGAGGAGGAGAAAAATAATTTGCAAGGAAAATTCAAAGAAATTGAAGTTAAAGCATTTGCAGTTCAAGAAAATTATAAAGAGACCGAAAAGTTAATTCGTCTGCAAGAAGAAGTTTGTGACACGTCCAAATCCAACTATAATAAAGTCAAGAAGACTATGGATGAACTCAGAGGATCAGAGGTTGACGCAGAGTACAAACTACAAGATTTGAAGAAGTTGTACAAAGAATTAGAGTTGAAAGAGAAGGGTTACAGGACAAAGCTTGATGATTTGCAGACTGCTTTAGCAAAGCATATGGAGCAAATTCACAAAGATCTTGTTGACCCCGAGAAGCTTCAGGCAACTCTTGCAGAAGATATTGTTGAGTGTCACGACCTGAAAAGGGCTCTTGAAATGGTGACGCTGCTGGATGCACAACTAAAAGAAATGAATCCAAACCTTGATTCAATCACTGAATATCGAAGGAAAGTGGAGGTGTATAATGAAAGAGTCGAGGATCTCATTAGCGTCACTCAGCAACGCGATAGCATGAAGAAGCAATATGATGAATTGAGGAAGAAAAGGTTGGACGAGTTTATGTCTGGATTTAATGCTATATCTTTGAAGTTAAAGGAAATGTACCAGATGATCACACTCGGAGGTGATGCAGAACTTGAGCTGGTGGACTCTTTGGATCCTTTCTCTGAAGGCGTTGTTTTCAGTGTCAGACCACCTAAAAAGAGCTGGAAAAATATCGCTAACTTGTCTGGTGGTGAAAAGACTCTAAGTTCTTTGGCTCTTGTTTTTGCGCTTCACCACTACAAGCCGACTCCGCTTTATGTGATGGACGAAATTGATGCTGCTTTAGATTTCAAAAACGTATCCATTGTTGGGCATTATGTGAAGGACAGAACCAAGGATGCTCAATTCATCATTATAAGCTTGAGGAACAATATGTTTGAGTTAGCAGACAGACTAGTGGGGATCTATAAAACTGATAACTGCACAAAGAGCATTACCATCAACCCAAGAAGCTTTTCATGTGCTGATGAGAATTGTGTTTGTGGTGGAATTAGACACTGTGAATTCTGTGCTGGGGTTGTGTTGAATTGTGGTGAACGTTTAGAAATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTGA 4893 41.34 MVKAAATSLFGASILFHLLLLASFHSIGGTLEEKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLKCFIVRKDLPASQFSSSLFSLSLCFVGFFVSLPSTAAQFVPPFTHHRAAHTNLRPFQIRIRFNQIFSTMVISEAVDEMMAESVDSFGGTSRGPRLFIKEMVLCNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSANHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIEESNKQLESLNEKRTGVVQMVKLAEKERDGLEEVKNEAEAYMLKELSHLKWREKASKLAHEDTTKRITELQDEVSTLEANKKAEREKIRETSKELKELETVHEKNMKRKEELDNDLRRSKEKFKDFERQDVKYREDLKHIKQKIKKLDDKLEKDSTKIDDLKKECEESTSLIPKLEESIPQFQKLLSDEEKILDEIQESSKVETERYRSELATVRVELEPWEKQLTEHKGKLEVACTESKLLSEKHEGGRATFDDARKQMVNILKNIEEKSSNIEQIKNELQKRKLETLKAQEEEQECIKEQESLIPLEHAARQKVAELKSVMDSEKSQGSVLKAILKAKENNQIEGIYGRMGDLGAIDAKYDVAISTACHGLDYIVVETSGAAQACVELLRRENLGVATFMILEKQVDHMSKLKAKVSTPEGVPRLFDLIKVQDDRMKLAFFAALGNTVVAKDLEQATRIAYGGNRDFRRVVTLDGALLEKSGTMSGGGRMPRGGKMGTSVRSVSVSKEAFVKAEKDLLDMVDALNKIRLRIADAVQRHQVSEKAVEQLEMLLAKRQQEIDSLTSQHSYLEKQLGSLEAASKPKDDEIKRLQELRNFILEEEKEIDRLMLGSKKLTEKALELQRQIENAGGERLKAQKSKVNKIQSDINKTITDINRYKVQIESGEATIKKLTKALEDSKKEKERLEEEKNNLQGKFKEIEVKAFAVQENYKETEKLIRLQEEVCDTSKSNYNKVKKTMDELRGSEVDAEYKLQDLKKLYKELELKEKGYRTKLDDLQTALAKHMEQIHKDLVDPEKLQATLAEDIVECHDLKRALEMVTLLDAQLKEMNPNLDSITEYRRKVEVYNERVEDLISVTQQRDSMKKQYDELRKKRLDEFMSGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPRSFSCADENCVCGGIRHCEFCAGVVLNCGERLEMDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAES 1630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1096398 1121096 - ClG42_11g0015200.10 Clacu11g0152 261029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0152 1630 Coils Coil 1248 1285 - -
Clacu11g0152 1630 Gene3D - 1256 1437 IPR027417 -
Clacu11g0152 1630 FunFam Structural maintenance of chromosomes 4 1260 1437 - -
Clacu11g0152 1630 Coils Coil 1158 1192 - -
Clacu11g0152 1630 Gene3D - 226 433 IPR027417 -
Clacu11g0152 1630 Pfam SMC proteins Flexible Hinge Domain 757 873 IPR010935 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Clacu11g0152 1630 Coils Coil 471 540 - -
Clacu11g0152 1630 Coils Coil 958 978 - -
Clacu11g0152 1630 FunFam Structural maintenance of chromosomes 4 226 435 - -
Clacu11g0152 1630 Gene3D - 816 902 - -
Clacu11g0152 1630 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 219 1436 - GO:0000799(PANTHER)|GO:0007076(PANTHER)
Clacu11g0152 1630 Coils Coil 671 708 - -
Clacu11g0152 1630 Coils Coil 1067 1115 - -
Clacu11g0152 1630 Pfam Auxin responsive protein 1531 1613 IPR003676 GO:0009733(InterPro)
Clacu11g0152 1630 FunFam Structural maintenance of chromosomes 4 742 816 - -
Clacu11g0152 1630 Gene3D - 735 815 - -
Clacu11g0152 1630 SUPERFAMILY Smc hinge domain 723 909 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Clacu11g0152 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 1434 IPR027417 -
Clacu11g0152 1630 Coils Coil 1024 1044 - -
Clacu11g0152 1630 Coils Coil 432 455 - -
Clacu11g0152 1630 SMART SMC_hinge_2 757 873 IPR010935 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Clacu11g0152 1630 Coils Coil 548 589 - -
Clacu11g0152 1630 Pfam RecF/RecN/SMC N terminal domain 227 1427 IPR003395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0391 Clacu-Chr3:4334262 Clacu11g0152 Clacu-Chr11:1096398 4.20E-30 dispersed
Clacu06g0442 Clacu-Chr6:5215806 Clacu11g0152 Clacu-Chr11:1096398 4.90E-21 dispersed
Clacu08g1605 Clacu-Chr8:25837010 Clacu11g0152 Clacu-Chr11:1096398 3.50E-16 dispersed
Clacu09g0176 Clacu-Chr9:1687887 Clacu11g0152 Clacu-Chr11:1096398 2.70E-17 dispersed
Clacu09g0812 Clacu-Chr9:7381474 Clacu11g0152 Clacu-Chr11:1096398 1.40E-39 dispersed
Clacu10g1863 Clacu-Chr10:32292009 Clacu11g0152 Clacu-Chr11:1096398 1.80E-13 dispersed
Clacu11g0152 Clacu-Chr11:1096398 Clacu11g0518 Clacu-Chr11:4828682 5.90E-14 dispersed
Clacu11g0152 Clacu-Chr11:1096398 Clacu04g1066 Clacu-Chr4:24888320 2.80E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0152 K06675 - csv:101219330 2183.3