Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0152 | ATGGTTAAGGCTGCGGCAACTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTCATTCTATAGGTGGAACATTAGAGGAAAAATGCGAAAAGAATTCGATAGCAATAAGCCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATAGTGGAGATAACAAACCAATGCAGGAACAATTGCAGCATCTACGATTTGCATTTGAAATGTGGATCATTCAGCTCAGCCAAGTTAATAAACCCTCGAATCTTCAAGCGCATTGCGGTCGATGATTGTCTTATCAACAATGGAAGACCCATCCCTCCAGGAATTACTCTTTCTTTTCAATATGCTACTAACTTTCAGTTTCCACTTTCGGTTTCCTCTCTCAAATGTTTCATTGTGAGGAAGGATCTTCCTGCCTCTCAGTTCAGTTCATCATTATTTTCTTTATCTCTGTGTTTCGTGGGATTCTTTGTGAGTTTGCCGTCAACGGCCGCCCAGTTCGTGCCTCCGTTCACTCACCATCGTGCCGCCCACACCAATTTGCGTCCGTTCCAGATTCGCATTCGTTTCAACCAAATATTTTCCACAATGGTTATCAGCGAAGCCGTGGATGAGATGATGGCCGAAAGTGTTGATTCTTTCGGTGGAACATCCAGAGGTCCCAGGCTCTTCATTAAGGAAATGGTTTTGTGCAACTTCAAGTCCTACGCTGGGGAACAGCGCGTTGGACCCTTCCATAAGAGTTTTTCTGCGGTGGTTGGACCGAATGGCAGTGGAAAAAGTAATGTAATTGATGCCATGTTATTTGTCTTCGGAAAGCGAGCTAAACAGATGCGACTGAACAAAGTCTCGGAGCTAATTCATAATTCCGCCAATCACCAGAATTTAGAGAGTGCAAGTGTTTCAGTTCACTTCCAAGAAATAGTTGATTTGGACGATGGAGCATATGAAGCTGTTCCAGGAAGTGACTTTGTTATAACCAGGGCTGCCTTCCGTGATAACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAATTGAAGGGTAAAGGAGTTGACTTGGACAACAATCGTTTTCTAATTCTTCAGGGAGAAGTTGAGCAGATTTCACTGATGAAGCCAAAAGCACAAGGACCTCACGATGAGGGCTTTCTTGAATATCTTGAGGATATAATCGGAACCATCAAATATGTTGAAATGATTGAGGAGTCAAACAAGCAGCTAGAGTCCCTCAATGAGAAACGTACTGGTGTGGTTCAAATGGTTAAGTTAGCTGAGAAGGAAAGAGATGGCTTAGAGGAGGTGAAGAATGAAGCAGAAGCTTACATGCTGAAAGAATTATCACATTTAAAGTGGCGAGAGAAAGCCTCTAAACTAGCTCATGAGGATACTACAAAGAGAATAACTGAACTGCAAGATGAAGTGTCCACCTTAGAAGCAAATAAGAAAGCTGAGAGGGAAAAGATTCGTGAAACTAGCAAGGAGTTGAAGGAGCTTGAAACCGTGCATGAAAAAAATATGAAAAGAAAAGAGGAACTTGATAATGACTTGCGAAGATCCAAGGAAAAATTTAAGGACTTTGAACGTCAGGATGTTAAATATCGTGAGGATTTGAAGCACATAAAGCAAAAGATTAAGAAACTTGATGATAAGCTTGAAAAGGATTCTACAAAAATTGATGACTTAAAAAAGGAGTGTGAAGAATCAACAAGCTTGATTCCAAAGCTTGAGGAGAGTATTCCACAATTCCAAAAACTTCTCTCAGATGAGGAAAAGATCTTGGACGAGATTCAAGAGAGTTCAAAAGTTGAAACTGAGAGGTACCGCTCAGAGCTTGCAACAGTTCGTGTTGAATTAGAACCTTGGGAAAAGCAACTGACTGAGCACAAGGGGAAACTTGAAGTCGCATGTACTGAGAGCAAACTATTGAGTGAGAAGCATGAAGGTGGTCGTGCAACATTTGATGATGCTCGGAAGCAGATGGTTAACATACTGAAAAACATAGAAGAAAAGTCTTCGAACATTGAACAGATTAAAAATGAGCTTCAAAAGAGAAAACTGGAAACCTTGAAAGCGCAAGAAGAAGAACAAGAGTGTATCAAGGAACAAGAATCACTTATTCCTCTAGAACATGCTGCTAGGCAGAAGGTTGCAGAACTTAAGTCTGTTATGGATTCAGAGAAAAGTCAAGGATCGGTCCTTAAAGCAATTTTGAAGGCAAAGGAAAACAATCAGATTGAGGGTATATATGGGCGAATGGGCGATTTAGGTGCTATCGATGCGAAGTATGATGTTGCAATATCAACGGCTTGCCATGGACTTGATTATATTGTAGTGGAAACATCTGGTGCTGCACAAGCTTGTGTAGAATTACTGCGAAGGGAAAATCTTGGTGTTGCAACTTTCATGATATTGGAAAAGCAGGTTGATCATATGTCAAAGTTGAAGGCAAAGGTTAGCACTCCTGAGGGGGTTCCTCGCCTTTTTGATTTAATTAAGGTTCAGGATGATAGGATGAAGCTTGCCTTCTTTGCTGCATTGGGGAATACAGTTGTTGCTAAGGATCTTGAGCAGGCAACACGAATTGCATATGGTGGTAATAGAGATTTTCGACGTGTTGTAACTCTTGATGGTGCCCTGTTGGAAAAATCTGGAACCATGAGTGGCGGGGGACGTATGCCTCGTGGTGGTAAGATGGGTACATCAGTTCGATCTGTGAGTGTATCAAAAGAAGCATTTGTAAAAGCTGAGAAAGATCTCTTAGATATGGTTGATGCACTGAACAAAATCCGTCTAAGAATTGCTGATGCTGTGCAACGTCACCAAGTTTCAGAGAAAGCAGTGGAACAGTTGGAGATGTTATTAGCCAAAAGGCAACAGGAGATTGACAGTTTGACTTCACAACACAGCTATCTTGAAAAGCAATTAGGTTCTCTTGAGGCTGCATCGAAACCAAAAGATGATGAGATCAAGCGATTGCAGGAGCTGAGGAATTTTATCTTGGAAGAGGAAAAAGAGATCGATAGACTTATGCTAGGCTCCAAAAAGCTAACAGAGAAGGCATTAGAACTTCAGAGACAGATCGAAAATGCTGGTGGTGAAAGATTGAAAGCTCAAAAGTCTAAAGTGAATAAGATTCAATCTGACATTAACAAAACCATAACAGATATCAATCGCTATAAAGTTCAAATAGAATCAGGCGAAGCAACAATAAAGAAGTTGACAAAAGCTCTTGAAGATTCAAAAAAGGAGAAGGAACGGCTTGAGGAGGAGAAAAATAATTTGCAAGGAAAATTCAAAGAAATTGAAGTTAAAGCATTTGCAGTTCAAGAAAATTATAAAGAGACCGAAAAGTTAATTCGTCTGCAAGAAGAAGTTTGTGACACGTCCAAATCCAACTATAATAAAGTCAAGAAGACTATGGATGAACTCAGAGGATCAGAGGTTGACGCAGAGTACAAACTACAAGATTTGAAGAAGTTGTACAAAGAATTAGAGTTGAAAGAGAAGGGTTACAGGACAAAGCTTGATGATTTGCAGACTGCTTTAGCAAAGCATATGGAGCAAATTCACAAAGATCTTGTTGACCCCGAGAAGCTTCAGGCAACTCTTGCAGAAGATATTGTTGAGTGTCACGACCTGAAAAGGGCTCTTGAAATGGTGACGCTGCTGGATGCACAACTAAAAGAAATGAATCCAAACCTTGATTCAATCACTGAATATCGAAGGAAAGTGGAGGTGTATAATGAAAGAGTCGAGGATCTCATTAGCGTCACTCAGCAACGCGATAGCATGAAGAAGCAATATGATGAATTGAGGAAGAAAAGGTTGGACGAGTTTATGTCTGGATTTAATGCTATATCTTTGAAGTTAAAGGAAATGTACCAGATGATCACACTCGGAGGTGATGCAGAACTTGAGCTGGTGGACTCTTTGGATCCTTTCTCTGAAGGCGTTGTTTTCAGTGTCAGACCACCTAAAAAGAGCTGGAAAAATATCGCTAACTTGTCTGGTGGTGAAAAGACTCTAAGTTCTTTGGCTCTTGTTTTTGCGCTTCACCACTACAAGCCGACTCCGCTTTATGTGATGGACGAAATTGATGCTGCTTTAGATTTCAAAAACGTATCCATTGTTGGGCATTATGTGAAGGACAGAACCAAGGATGCTCAATTCATCATTATAAGCTTGAGGAACAATATGTTTGAGTTAGCAGACAGACTAGTGGGGATCTATAAAACTGATAACTGCACAAAGAGCATTACCATCAACCCAAGAAGCTTTTCATGTGCTGATGAGAATTGTGTTTGTGGTGGAATTAGACACTGTGAATTCTGTGCTGGGGTTGTGTTGAATTGTGGTGAACGTTTAGAAATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTGA | 4893 | 41.34 | MVKAAATSLFGASILFHLLLLASFHSIGGTLEEKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLKCFIVRKDLPASQFSSSLFSLSLCFVGFFVSLPSTAAQFVPPFTHHRAAHTNLRPFQIRIRFNQIFSTMVISEAVDEMMAESVDSFGGTSRGPRLFIKEMVLCNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSANHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIEESNKQLESLNEKRTGVVQMVKLAEKERDGLEEVKNEAEAYMLKELSHLKWREKASKLAHEDTTKRITELQDEVSTLEANKKAEREKIRETSKELKELETVHEKNMKRKEELDNDLRRSKEKFKDFERQDVKYREDLKHIKQKIKKLDDKLEKDSTKIDDLKKECEESTSLIPKLEESIPQFQKLLSDEEKILDEIQESSKVETERYRSELATVRVELEPWEKQLTEHKGKLEVACTESKLLSEKHEGGRATFDDARKQMVNILKNIEEKSSNIEQIKNELQKRKLETLKAQEEEQECIKEQESLIPLEHAARQKVAELKSVMDSEKSQGSVLKAILKAKENNQIEGIYGRMGDLGAIDAKYDVAISTACHGLDYIVVETSGAAQACVELLRRENLGVATFMILEKQVDHMSKLKAKVSTPEGVPRLFDLIKVQDDRMKLAFFAALGNTVVAKDLEQATRIAYGGNRDFRRVVTLDGALLEKSGTMSGGGRMPRGGKMGTSVRSVSVSKEAFVKAEKDLLDMVDALNKIRLRIADAVQRHQVSEKAVEQLEMLLAKRQQEIDSLTSQHSYLEKQLGSLEAASKPKDDEIKRLQELRNFILEEEKEIDRLMLGSKKLTEKALELQRQIENAGGERLKAQKSKVNKIQSDINKTITDINRYKVQIESGEATIKKLTKALEDSKKEKERLEEEKNNLQGKFKEIEVKAFAVQENYKETEKLIRLQEEVCDTSKSNYNKVKKTMDELRGSEVDAEYKLQDLKKLYKELELKEKGYRTKLDDLQTALAKHMEQIHKDLVDPEKLQATLAEDIVECHDLKRALEMVTLLDAQLKEMNPNLDSITEYRRKVEVYNERVEDLISVTQQRDSMKKQYDELRKKRLDEFMSGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPRSFSCADENCVCGGIRHCEFCAGVVLNCGERLEMDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAES | 1630 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1096398 | 1121096 | - | ClG42_11g0015200.10 | Clacu11g0152 | 261029 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0152 | 1630 | Coils | Coil | 1248 | 1285 | - | - | |
Clacu11g0152 | 1630 | Gene3D | - | 1256 | 1437 | IPR027417 | - | |
Clacu11g0152 | 1630 | FunFam | Structural maintenance of chromosomes 4 | 1260 | 1437 | - | - | |
Clacu11g0152 | 1630 | Coils | Coil | 1158 | 1192 | - | - | |
Clacu11g0152 | 1630 | Gene3D | - | 226 | 433 | IPR027417 | - | |
Clacu11g0152 | 1630 | Pfam | SMC proteins Flexible Hinge Domain | 757 | 873 | IPR010935 | GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro) | |
Clacu11g0152 | 1630 | Coils | Coil | 471 | 540 | - | - | |
Clacu11g0152 | 1630 | Coils | Coil | 958 | 978 | - | - | |
Clacu11g0152 | 1630 | FunFam | Structural maintenance of chromosomes 4 | 226 | 435 | - | - | |
Clacu11g0152 | 1630 | Gene3D | - | 816 | 902 | - | - | |
Clacu11g0152 | 1630 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | 219 | 1436 | - | GO:0000799(PANTHER)|GO:0007076(PANTHER) | |
Clacu11g0152 | 1630 | Coils | Coil | 671 | 708 | - | - | |
Clacu11g0152 | 1630 | Coils | Coil | 1067 | 1115 | - | - | |
Clacu11g0152 | 1630 | Pfam | Auxin responsive protein | 1531 | 1613 | IPR003676 | GO:0009733(InterPro) | |
Clacu11g0152 | 1630 | FunFam | Structural maintenance of chromosomes 4 | 742 | 816 | - | - | |
Clacu11g0152 | 1630 | Gene3D | - | 735 | 815 | - | - | |
Clacu11g0152 | 1630 | SUPERFAMILY | Smc hinge domain | 723 | 909 | IPR036277 | GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro) | |
Clacu11g0152 | 1630 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 227 | 1434 | IPR027417 | - | |
Clacu11g0152 | 1630 | Coils | Coil | 1024 | 1044 | - | - | |
Clacu11g0152 | 1630 | Coils | Coil | 432 | 455 | - | - | |
Clacu11g0152 | 1630 | SMART | SMC_hinge_2 | 757 | 873 | IPR010935 | GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro) | |
Clacu11g0152 | 1630 | Coils | Coil | 548 | 589 | - | - | |
Clacu11g0152 | 1630 | Pfam | RecF/RecN/SMC N terminal domain | 227 | 1427 | IPR003395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0391 | Clacu-Chr3:4334262 | Clacu11g0152 | Clacu-Chr11:1096398 | 4.20E-30 | dispersed | |
Clacu06g0442 | Clacu-Chr6:5215806 | Clacu11g0152 | Clacu-Chr11:1096398 | 4.90E-21 | dispersed | |
Clacu08g1605 | Clacu-Chr8:25837010 | Clacu11g0152 | Clacu-Chr11:1096398 | 3.50E-16 | dispersed | |
Clacu09g0176 | Clacu-Chr9:1687887 | Clacu11g0152 | Clacu-Chr11:1096398 | 2.70E-17 | dispersed | |
Clacu09g0812 | Clacu-Chr9:7381474 | Clacu11g0152 | Clacu-Chr11:1096398 | 1.40E-39 | dispersed | |
Clacu10g1863 | Clacu-Chr10:32292009 | Clacu11g0152 | Clacu-Chr11:1096398 | 1.80E-13 | dispersed | |
Clacu11g0152 | Clacu-Chr11:1096398 | Clacu11g0518 | Clacu-Chr11:4828682 | 5.90E-14 | dispersed | |
Clacu11g0152 | Clacu-Chr11:1096398 | Clacu04g1066 | Clacu-Chr4:24888320 | 2.80E-16 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0152 | K06675 | - | csv:101219330 | 2183.3 |