Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0158 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAATAATAACAATAACAACAGCAGCAACAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.76 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1184217 1185134 + ClG42_11g0015800.10 Clacu11g0158 261035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0158 305 FunFam Zinc-finger homeodomain protein 2 220 291 - -
Clacu11g0158 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Clacu11g0158 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Clacu11g0158 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Clacu11g0158 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Clacu11g0158 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu11g0158 305 Gene3D - 220 292 - -
Clacu11g0158 305 MobiDBLite consensus disorder prediction 201 221 - -
Clacu11g0158 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0158 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1917 Clacu-Chr1:31270011 Clacu11g0158 Clacu-Chr11:1184217 4.90E-47 dispersed
Clacu05g2632 Clacu-Chr5:34000212 Clacu11g0158 Clacu-Chr11:1184217 1.80E-32 dispersed
Clacu08g1304 Clacu-Chr8:22955505 Clacu11g0158 Clacu-Chr11:1184217 4.40E-46 dispersed
Clacu09g1868 Clacu-Chr9:33427554 Clacu11g0158 Clacu-Chr11:1184217 3.70E-17 dispersed
Clacu10g0865 Clacu-Chr10:17950168 Clacu11g0158 Clacu-Chr11:1184217 6.60E-37 dispersed
Clacu10g1493 Clacu-Chr10:28111303 Clacu11g0158 Clacu-Chr11:1184217 2.50E-35 dispersed
Clacu11g0158 Clacu-Chr11:1184217 Clacu08g1662 Clacu-Chr8:26322375 1.40E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1234 . Blo03g00280 Bda06g00184 . . . . . . . . . . . . . . . . . . . . . Cla11g00012 Cam11g0009 Cec11g0010 Cco11g0011 Clacu11g0158 Cmu11g0008 Cre11g0510 . . . . . . . . . . . . . . . Bma12g00035 . . . . . . . Cpe01g01712 . . . . . . . . . . . . . . . . . . Cme10g01673
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1304 . 55 246 ZF-HD Transcription Factor Family AT5G65410 51.2 2.5e-45 179.5
Clacu08g1304 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 1.0e-49 193.7
Clacu01g1917 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Clacu10g0865 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.8e-41 166.4
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 8.6e-55 211.1
Clacu01g2019 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Clacu10g1493 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.8e-51 198.7
Clacu09g1867 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.0e-51 198.4
Clacu10g1493 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Clacu09g1867 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Clacu09g1867 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Clacu10g1493 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Clacu05g2632 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 7.9e-48 187.6
Clacu09g1867 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Clacu08g1304 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 1.0e-49 193.7
Clacu01g1917 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Clacu10g0865 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.8e-41 166.4
Clacu09g1867 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Clacu10g1493 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Clacu01g2019 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Clacu08g1304 . 55 246 ZF-HD Transcription Factor Family AT5G65410 51.2 2.5e-45 179.5
Clacu05g2632 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 7.9e-48 187.6
Clacu09g1867 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Clacu10g1493 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.8e-51 198.7
Clacu09g1867 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.0e-51 198.4
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 8.6e-55 211.1
Clacu10g1493 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Clacu09g1867 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48586 PF04770 ZF-HD_dimer 3.10E-29 No_clan Clacu TF