Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0158 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAATAATAACAATAACAACAGCAGCAACAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.76 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1184217 1185134 + ClG42_11g0015800.10 Clacu11g0158 261035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0158 305 FunFam Zinc-finger homeodomain protein 2 220 291 - -
Clacu11g0158 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Clacu11g0158 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Clacu11g0158 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Clacu11g0158 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Clacu11g0158 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu11g0158 305 Gene3D - 220 292 - -
Clacu11g0158 305 MobiDBLite consensus disorder prediction 201 221 - -
Clacu11g0158 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1917 Clacu-Chr1:31270011 Clacu11g0158 Clacu-Chr11:1184217 4.90E-47 dispersed
Clacu05g2632 Clacu-Chr5:34000212 Clacu11g0158 Clacu-Chr11:1184217 1.80E-32 dispersed
Clacu08g1304 Clacu-Chr8:22955505 Clacu11g0158 Clacu-Chr11:1184217 4.40E-46 dispersed
Clacu09g1868 Clacu-Chr9:33427554 Clacu11g0158 Clacu-Chr11:1184217 3.70E-17 dispersed
Clacu10g0865 Clacu-Chr10:17950168 Clacu11g0158 Clacu-Chr11:1184217 6.60E-37 dispersed
Clacu10g1493 Clacu-Chr10:28111303 Clacu11g0158 Clacu-Chr11:1184217 2.50E-35 dispersed
Clacu11g0158 Clacu-Chr11:1184217 Clacu08g1662 Clacu-Chr8:26322375 1.40E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48586 PF04770 ZF-HD_dimer 3.10E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0158 - - - 0.0