Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0163 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACTATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCCTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAAGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTTAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAGGACAGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAATGATGGGGTGCCAACTTGGATGGATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTATGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTATAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGGTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1785 50.53 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLLVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMRTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMDSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1305609 1307616 + ClG42_11g0016300.10 Clacu11g0163 261040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0163 594 Gene3D - 278 593 IPR012334 -
Clacu11g0163 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu11g0163 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857(InterPro)
Clacu11g0163 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Clacu11g0163 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Clacu11g0163 594 CDD PMEI-like_3 87 237 - -
Clacu11g0163 594 NCBIfam pectinesterase inhibitor domain 81 235 IPR006501 GO:0004857(InterPro)
Clacu11g0163 594 PANTHER PECTINESTERASE 26 584 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu11g0163 594 FunFam Pectinesterase 80 236 - -
Clacu11g0163 594 MobiDBLite consensus disorder prediction 51 73 - -
Clacu11g0163 594 SUPERFAMILY Pectin lyase-like 280 578 IPR011050 -
Clacu11g0163 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Clacu11g0163 594 Coils Coil 154 174 - -
Clacu11g0163 594 MobiDBLite consensus disorder prediction 51 76 - -
Clacu11g0163 594 SMART PMEI_2 79 231 IPR006501 GO:0004857(InterPro)
Clacu11g0163 594 FunFam Pectinesterase 278 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0719 Clacu-Chr1:7810476 Clacu11g0163 Clacu-Chr11:1305609 2.60E-142 dispersed
Clacu01g0720 Clacu-Chr1:7817023 Clacu11g0163 Clacu-Chr11:1305609 5.60E-137 dispersed
Clacu05g0727 Clacu-Chr5:6110359 Clacu11g0163 Clacu-Chr11:1305609 1.80E-135 dispersed
Clacu09g0865 Clacu-Chr9:8047339 Clacu11g0163 Clacu-Chr11:1305609 9.30E-92 dispersed
Clacu10g0004 Clacu-Chr10:445953 Clacu11g0163 Clacu-Chr11:1305609 1.60E-100 dispersed
Clacu11g0163 Clacu-Chr11:1305609 Clacu11g1635 Clacu-Chr11:27504948 1.60E-81 dispersed
Clacu11g0163 Clacu-Chr11:1305609 Clacu06g0481 Clacu-Chr6:5595222 2.00E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0163 - - - 0.0