Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0163 | ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACTATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCCTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAAGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTTAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAGGACAGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAATGATGGGGTGCCAACTTGGATGGATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTATGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTATAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGGTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA | 1785 | 50.53 | MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLLVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMRTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMDSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF | 594 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1305609 | 1307616 | + | ClG42_11g0016300.10 | Clacu11g0163 | 261040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0163 | 594 | Gene3D | - | 278 | 593 | IPR012334 | - | |
Clacu11g0163 | 594 | Pfam | Pectinesterase | 284 | 578 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Clacu11g0163 | 594 | Pfam | Plant invertase/pectin methylesterase inhibitor | 83 | 231 | IPR006501 | GO:0004857(InterPro) | |
Clacu11g0163 | 594 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 82 | 235 | IPR035513 | - | |
Clacu11g0163 | 594 | ProSitePatterns | Pectinesterase signature 2. | 428 | 437 | IPR033131 | - | |
Clacu11g0163 | 594 | CDD | PMEI-like_3 | 87 | 237 | - | - | |
Clacu11g0163 | 594 | NCBIfam | pectinesterase inhibitor domain | 81 | 235 | IPR006501 | GO:0004857(InterPro) | |
Clacu11g0163 | 594 | PANTHER | PECTINESTERASE | 26 | 584 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Clacu11g0163 | 594 | FunFam | Pectinesterase | 80 | 236 | - | - | |
Clacu11g0163 | 594 | MobiDBLite | consensus disorder prediction | 51 | 73 | - | - | |
Clacu11g0163 | 594 | SUPERFAMILY | Pectin lyase-like | 280 | 578 | IPR011050 | - | |
Clacu11g0163 | 594 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 80 | 236 | IPR035513 | - | |
Clacu11g0163 | 594 | Coils | Coil | 154 | 174 | - | - | |
Clacu11g0163 | 594 | MobiDBLite | consensus disorder prediction | 51 | 76 | - | - | |
Clacu11g0163 | 594 | SMART | PMEI_2 | 79 | 231 | IPR006501 | GO:0004857(InterPro) | |
Clacu11g0163 | 594 | FunFam | Pectinesterase | 278 | 593 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0719 | Clacu-Chr1:7810476 | Clacu11g0163 | Clacu-Chr11:1305609 | 2.60E-142 | dispersed | |
Clacu01g0720 | Clacu-Chr1:7817023 | Clacu11g0163 | Clacu-Chr11:1305609 | 5.60E-137 | dispersed | |
Clacu05g0727 | Clacu-Chr5:6110359 | Clacu11g0163 | Clacu-Chr11:1305609 | 1.80E-135 | dispersed | |
Clacu09g0865 | Clacu-Chr9:8047339 | Clacu11g0163 | Clacu-Chr11:1305609 | 9.30E-92 | dispersed | |
Clacu10g0004 | Clacu-Chr10:445953 | Clacu11g0163 | Clacu-Chr11:1305609 | 1.60E-100 | dispersed | |
Clacu11g0163 | Clacu-Chr11:1305609 | Clacu11g1635 | Clacu-Chr11:27504948 | 1.60E-81 | dispersed | |
Clacu11g0163 | Clacu-Chr11:1305609 | Clacu06g0481 | Clacu-Chr6:5595222 | 2.00E-137 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0163 | - | - | - | 0.0 |