Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0173 ATGTCCTTTTCAGCTGTCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCACGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCGATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGATGGGCGAATTCTGAGTGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCAGTGTCCAGCAACACCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGTAGCAAACAGGGAACCCATTGAAAAGAAACAGAACACTAGAAATGGATGCAGGCTCTTTGGTATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTATTTCAACGCCTAAAATGGTCGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAATTGGAGGAGATGTTTGACATAGAGGGTGAGCTCTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTCTGCAAACCAGATTCCGATACAATTGCCAACCACACGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2037 45.12 MSFSAVSNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNTYWSNTNRVENIMDTSSHVANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPISTPKMVGEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGDGKLCKPDSDTIANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1432098 1440235 - ClG42_11g0017300.10 Clacu11g0173 261050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0173 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Clacu11g0173 678 Gene3D - 125 230 IPR015300 -
Clacu11g0173 678 MobiDBLite consensus disorder prediction 362 386 - -
Clacu11g0173 678 FunFam Auxin response factor 548 642 - -
Clacu11g0173 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Clacu11g0173 678 FunFam Auxin response factor 126 230 - -
Clacu11g0173 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Clacu11g0173 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu11g0173 678 FunFam Auxin response factor 291 363 - -
Clacu11g0173 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Clacu11g0173 678 Gene3D - 291 364 - -
Clacu11g0173 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Clacu11g0173 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu11g0173 678 Pfam AUX/IAA family 552 644 IPR033389 -
Clacu11g0173 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Clacu11g0173 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Clacu11g0173 678 Gene3D - 548 642 - -
Clacu11g0173 678 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1150 Clacu-Chr7:26172365 Clacu11g0173 Clacu-Chr11:1432098 4.10E-174 dispersed
Clacu11g0173 Clacu-Chr11:1432098 Clacu11g1335 Clacu-Chr11:22767255 3.10E-17 dispersed
Clacu11g0173 Clacu-Chr11:1432098 Clacu09g0945 Clacu-Chr9:8817222 8.30E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48587 PF02309 AUX_IAA 1.30E-11 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0173 K14486 - csv:101204612 1315.06