Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0182 ATGGAAGATCAGAATAGTTTGAAATCACGGTGGCGTTTACGTTACTGTTATGCACATGGAGGAATAGCTGCCGGGGAAAGTCGTGGTTATCCAAGAATTGGTGAACATATGGAGCATGGAGATCGAATTGAAGAAGGTAGCTCCAGGTTGCTGCGGGGCAATAGCGTTGCTGGGAGTAGTAATGATTACAGGTGGGTTGACGGTAGTGAAGTCGACTCCGAATCGCCTCCATGGTCGCTGTTTGAAGAAAGAGAGAGCGGGGAAGGATATGGATCTATCAGAAGGAGGTTAATTAAGAAGCCCAAGAGAGTTGATTCTTTTGATGTTGAAGCAATGGAGATTGCCGGTGCCAACTATCACCATTTAAAGGATGTTTCCCTTTGGCAAACTATTGCTATAGCATTTCAAACACTTGGTGTTGTGTACGGTGACATGGGTACAAGTCCATTATACGTCTTTGCTGATGTATTTAGCAAGGTGCATATTGAGGCAGATGTTGATGTCTTGGGGGCTCTTTCCTTAGTGATTTATACAATTGCTCTTATTCCTTTGGCAAAATATGTTTTCGTAGTGCTCAGAGCCAACGACAATGGGGAAGGAGGAACATTTGCATTGTATTCGCTTATCTGTAGGTATGCCAAAGTTAACATGCTGCCAAACCGTCAGCCAGCTGACGAACATATCTCAAGTTTTAAGCTTAAACTTCCCACTCCAGAGTTGGAAAGGGCCTTACATATCAAAGAGACTCTGGAGAAGAGATCATCCTTGAAAACTCTTATATTGCTGTTGGTTCTCATGGGCACTTCAATGATTATTGGGGATGGTATTCTAACCCCAGCAATATCAGTGATGTCTGCTGTGAGTGGTCTGCAGGGACAAATAAAGTCATTTGATACAAATGCTGTGGTTATTGTTTCAATTATAATCCTTGTGGCCTTGTTCAGCATACAGAAATTTGGAACTGGGAAAGTAGGATTTATGTTTGCTCCTGTCCTTGCTTTGTGGTTTTTTAGTTTGGGATCTATTGGAATTTACAATGTAGTGAAGTATGATCCCACCGTTGTAAGAGCTCTCAATCCCACTTACATCTATTTATTCTTCAAGAAAAATTCAAAAAATGCATGGTCAGCTCTCGGTGGTTGTGTTTTGTGCGTAACAGGAGCTGAAGCCATGTTCGCCGATCTAGGCCATTTCACTGTGCCAGCCATACAGATTGCCTTCACATGTGTTGTTTTCCCCTGCCTTCTCTTGGCATACATGGGCCAGGCTGCATACCTTTTGAAACATCCAGATTCTGCATCAAGAATATTTTATGATTCTGTGCCAGCAAGTCTTTTTTGGCCGGTCTTTGTGACAGCAACACTTGCTGCTATGATTGCGAGCCAAGCAATGATTTCTGCAACCTTTTCTTGTGTCAAGCAATCTATGGCTCTTGGATGTTTTCCAAGAATGAAGATAGTTCACACCTCTAAGAGACGAATGGGTCAAATTTACATCCCTGTGATCAATTGGTTTTTGATGATAATGTGCATATTTGTCGTTGCAATATTTCGAAGGACTACAGACATCGCCAATGCTTATGGTATTGCTGAAGTTGGCGTGATGTTGGTGAGCACTGTCCTGGTGACTCTAGTAATGCTCCTAATCTGGCAGACAAATTTGTTTCTTGCGTTTTGTTTCCCACTTGTATTTGGGTCAGTGGAAGTTATCTACTTATCTGCAGTTCTATCAAAAATCAGAGAGGGCGGATGGTTGCCACTTGCTTTTGCTTCCGTCTTCCTCTCTGTGATGTACACATGGAACTATGGGAGTGTGTTGAAGTACCAAAGTGAGGTGAGAGACAAAATATCAACGGATTTCTTGCTTGAACTGGGTTCTACACTTGGAACTGTAAGAGTTCCAGGAATTGGTCTCCTGTACAATGAGCTTGTCCAAGGCATTCCTGCAATTTTTGGGCAATTTCTTCTTAGCCTTCCAGCCATCCACTCCACAATTGTGTTTGTGTGCATTAAATATGTTCCAATCCCCGTGGTTCCACAAGAGGAAAGGTTTTTGTTTAGGAGGGTTGGCCCAAAAGATTACCATATGTTCCGTTGCATAGCAAGATATGGTTACAAGGATGTGCGGAAGGAAGATCACCATGCGTTTGAGCAACTTTTGATGGAAAGCCTCGAGAAGTTCTTAAGAAAGGAGTCTCAAGATCTTGCCCTGGAGAGCAATCTGAATGAGTTGCAATTCGACAATATTTCAGAGAGGTCGCGGGATTCTCCATCTCGAGGTGCTGCTGATGTGAATGAGGAGCTGAGAATTCCATTGATGGAACAGGAAAGAACTGTGGATTCGGAAGAAGGTTATGGGGTGCGGTTGCCATCCAGCATTATGGCATCAGATGACGACCCTAGTTTGGAGTATGAGCTATCAGCCCTTCGGGAAGCAATGGATTCAGGATTTACGTATCTATTGGCCCAAGGGGACGTTCGAGCAAAGAAAAACTCATTTTTTGTTAAGAAGCTTGTTATAAACTATTTCTATGCATTCCTAAGGAGGAACTGTAGGGGTGGTGCAGCAACAATGCGAGTTCCCCACATGAACATTATGCAAGTTGGGATGACTTACATGGTTTGA 2625 43.05 MEDQNSLKSRWRLRYCYAHGGIAAGESRGYPRIGEHMEHGDRIEEGSSRLLRGNSVAGSSNDYRWVDGSEVDSESPPWSLFEERESGEGYGSIRRRLIKKPKRVDSFDVEAMEIAGANYHHLKDVSLWQTIAIAFQTLGVVYGDMGTSPLYVFADVFSKVHIEADVDVLGALSLVIYTIALIPLAKYVFVVLRANDNGEGGTFALYSLICRYAKVNMLPNRQPADEHISSFKLKLPTPELERALHIKETLEKRSSLKTLILLLVLMGTSMIIGDGILTPAISVMSAVSGLQGQIKSFDTNAVVIVSIIILVALFSIQKFGTGKVGFMFAPVLALWFFSLGSIGIYNVVKYDPTVVRALNPTYIYLFFKKNSKNAWSALGGCVLCVTGAEAMFADLGHFTVPAIQIAFTCVVFPCLLLAYMGQAAYLLKHPDSASRIFYDSVPASLFWPVFVTATLAAMIASQAMISATFSCVKQSMALGCFPRMKIVHTSKRRMGQIYIPVINWFLMIMCIFVVAIFRRTTDIANAYGIAEVGVMLVSTVLVTLVMLLIWQTNLFLAFCFPLVFGSVEVIYLSAVLSKIREGGWLPLAFASVFLSVMYTWNYGSVLKYQSEVRDKISTDFLLELGSTLGTVRVPGIGLLYNELVQGIPAIFGQFLLSLPAIHSTIVFVCIKYVPIPVVPQEERFLFRRVGPKDYHMFRCIARYGYKDVRKEDHHAFEQLLMESLEKFLRKESQDLALESNLNELQFDNISERSRDSPSRGAADVNEELRIPLMEQERTVDSEEGYGVRLPSSIMASDDDPSLEYELSALREAMDSGFTYLLAQGDVRAKKNSFFVKKLVINYFYAFLRRNCRGGAATMRVPHMNIMQVGMTYMV 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1531686 1537466 + ClG42_11g0018200.10 Clacu11g0182 261059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0182 874 Pfam K+ potassium transporter integral membrane domain 134 621 IPR053951 -
Clacu11g0182 874 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 115 874 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
Clacu11g0182 874 Pfam K+ potassium transporter C-terminal domain 634 872 IPR053952 -
Clacu11g0182 874 NCBIfam potassium uptake protein 133 873 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0423 Clacu-Chr3:4631398 Clacu11g0182 Clacu-Chr11:1531686 1.10E-203 dispersed
Clacu09g0605 Clacu-Chr9:5161440 Clacu11g0182 Clacu-Chr11:1531686 3.60E-184 dispersed
Clacu09g1930 Clacu-Chr9:34180129 Clacu11g0182 Clacu-Chr11:1531686 7.70E-190 dispersed
Clacu10g0932 Clacu-Chr10:19279648 Clacu11g0182 Clacu-Chr11:1531686 1.30E-249 dispersed
Clacu10g1431 Clacu-Chr10:27452568 Clacu11g0182 Clacu-Chr11:1531686 2.90E-189 dispersed
Clacu11g0182 Clacu-Chr11:1531686 Clacu10g1060 Clacu-Chr10:22538122 7.90E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0182 K03549 - csv:101202804 1516.52