Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0191 TCAGTGTTTGTATTTTCACTTTGCAGTAAAAGTCCACAAAGATTTATGGAGGGAGGACAAGACGATGCCGGAAATGGGTTCACGGCGGCCACTGGATCAAATCATCCGAGACCCGAGGCGGCAGCTCCACCACCGGAAGGTGGTGGTCCGGTGGGTTCTTCAGCGGTGGCAGGAAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGGCCGGCGACTTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCACATATCATCACAGTAAGCACTGGCGAGGATGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATCTGCATTCTCTCTGCTAACGGTGTGATTTCGAGCGTCACGCTCCGTCAACCCGACTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATATTGTCATTGTCGGGATCGTTCATGCCGAGTGACAACGCAGGAACAAAGAGCAGAATGGGTGGAATGAGTGTCTCCTTAGCAAGTCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCCGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGAAACCAACATGAGCAAAAGTCGAAAAAATCAAAACCCGACGTCGTATTACCGGTTTCTGCTTTTCCAATCTCTAGTGTGGAACCAAAATCATACAAGACGACGACGACGACAACGACATCTTCGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAGAAGCCAGCCAACTGATATCAATGTATCATTAACAAGTGGCTAA 960 49.17 SVFVFSLCSKSPQRFMEGGQDDAGNGFTAATGSNHPRPEAAAPPPEGGGPVGSSAVAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPATSLTKTKYEVENLGEWVPCSVGANFTPHIITVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRMGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKSKKSKPDVVLPVSAFPISSVEPKSYKTTTTTTTSSFRAETWSPLVPDLRSQPTDINVSLTSG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1608732 1611567 - ClG42_11g0019100.10 Clacu11g0191 261068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0191 319 Gene3D - 135 266 - -
Clacu11g0191 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 255 - -
Clacu11g0191 319 ProSiteProfiles PPC domain profile profile. 130 275 IPR005175 -
Clacu11g0191 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 282 IPR039605 GO:0003680(InterPro)
Clacu11g0191 319 FunFam AT-hook motif nuclear-localized protein 1-like 135 265 - -
Clacu11g0191 319 MobiDBLite consensus disorder prediction 13 72 - -
Clacu11g0191 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Clacu11g0191 319 CDD DUF296 134 225 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0256 Clacu-Chr5:2232922 Clacu11g0191 Clacu-Chr11:1608732 3.20E-79 dispersed
Clacu05g0882 Clacu-Chr5:7714172 Clacu11g0191 Clacu-Chr11:1608732 4.90E-67 dispersed
Clacu09g1218 Clacu-Chr9:12256965 Clacu11g0191 Clacu-Chr11:1608732 1.50E-34 dispersed
Clacu11g0191 Clacu-Chr11:1608732 Clacu11g2082 Clacu-Chr11:31643692 1.40E-49 dispersed
Clacu11g0191 Clacu-Chr11:1608732 Clacu01g0359 Clacu-Chr1:3613399 1.30E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0191 - - - 0.0