Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0214 | ATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAGGCAAAGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGTGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCTGACTTGGAGACGATCACTTGCAAAACTTGCGTCACCCCTTGGCATGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCCGAAGATGTTCCCCTTCCTTCGCTAGGCAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAAGAACTTCTCAGCGGAAAGTTGCAATCCGACAAGGATGACCATGATACCAACAAGGAAAAGAAAAAAAAAGGGGATGATGTTTTGGATTTGTTTGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACCACCCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGTGGCGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAACAAAGCGCTACAAGTTAGCTGCGCGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGTATGATGGAGTTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGCTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGACGGTCAATGGAAGTGGAGGAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAATGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGTTTACCAATTACTACGCCTTGTGCCCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTAGGGAAGACATTCTTGAGAGAGAGAAGCACCGGTGGACGGGCTCTTAGATCCCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGGAGCATCTGAGAAGCTGTGTGAAGAAGAAGAGGTAGATGGGGAAGAGGAGAATGAGGATGAAGATGAGGATGAAGGGAAGGGAAAAGATGGAAGCAATGCAAATGTAAGCAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAGGTGGATGATTTGGAATGA | 2028 | 45.56 | MMEEDAKEQPKATELQAKKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPSLGNHSLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKLQSDKDDHDTNKEKKKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGQWKWRKDPPTSKRPVEALDSNGKRSRIRIRQSHIMSVREKLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRERSTGGRALRSQKNVLTCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDGASEKLCEEEEVDGEEENEDEDEDEGKGKDGSNANVSSSPVETRKRAKVDDLE | 675 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1871019 | 1877684 | - | ClG42_11g0021400.10 | Clacu11g0214 | 261091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0214 | 675 | ProSiteProfiles | YDG domain profile. | 291 | 439 | IPR003105 | - | |
Clacu11g0214 | 675 | Pfam | RING-type zinc-finger | 534 | 566 | IPR027370 | - | |
Clacu11g0214 | 675 | Pfam | Zinc finger, C3HC4 type (RING finger) | 163 | 201 | IPR018957 | GO:0046872(InterPro) | |
Clacu11g0214 | 675 | SUPERFAMILY | RING/U-box | 527 | 615 | - | - | |
Clacu11g0214 | 675 | CDD | RING-HC_ORTHRUS_rpt1 | 159 | 206 | IPR047498 | - | |
Clacu11g0214 | 675 | SMART | PHD_3 | 32 | 79 | IPR001965 | - | |
Clacu11g0214 | 675 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 513 | 637 | IPR013083 | - | |
Clacu11g0214 | 675 | ProSitePatterns | Zinc finger PHD-type signature. | 33 | 78 | IPR019786 | - | |
Clacu11g0214 | 675 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 83 | IPR013083 | - | |
Clacu11g0214 | 675 | ProSiteProfiles | Zinc finger RING-type profile. | 163 | 202 | IPR001841 | - | |
Clacu11g0214 | 675 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Clacu11g0214 | 675 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Clacu11g0214 | 675 | SUPERFAMILY | RING/U-box | 154 | 209 | - | - | |
Clacu11g0214 | 675 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 20 | 643 | IPR045134 | GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Clacu11g0214 | 675 | ProSitePatterns | Zinc finger RING-type signature. | 549 | 558 | IPR017907 | - | |
Clacu11g0214 | 675 | MobiDBLite | consensus disorder prediction | 620 | 675 | - | - | |
Clacu11g0214 | 675 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 262 | 457 | - | - | |
Clacu11g0214 | 675 | ProSiteProfiles | Zinc finger PHD-type profile. | 30 | 81 | IPR019787 | - | |
Clacu11g0214 | 675 | MobiDBLite | consensus disorder prediction | 625 | 648 | - | - | |
Clacu11g0214 | 675 | MobiDBLite | consensus disorder prediction | 484 | 506 | - | - | |
Clacu11g0214 | 675 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 229 | IPR013083 | - | |
Clacu11g0214 | 675 | SMART | G9a_1 | 286 | 443 | IPR003105 | - | |
Clacu11g0214 | 675 | Pfam | SAD/SRA domain | 293 | 442 | IPR003105 | - | |
Clacu11g0214 | 675 | SMART | ring_2 | 163 | 201 | IPR001841 | - | |
Clacu11g0214 | 675 | SMART | ring_2 | 534 | 590 | IPR001841 | - | |
Clacu11g0214 | 675 | Gene3D | - | 262 | 458 | IPR036987 | - | |
Clacu11g0214 | 675 | SUPERFAMILY | FYVE/PHD zinc finger | 25 | 85 | IPR011011 | - | |
Clacu11g0214 | 675 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 109 | 230 | - | - | |
Clacu11g0214 | 675 | SUPERFAMILY | PUA domain-like | 265 | 460 | IPR015947 | - | |
Clacu11g0214 | 675 | ProSiteProfiles | Zinc finger RING-type profile. | 534 | 590 | IPR001841 | - | |
Clacu11g0214 | 675 | MobiDBLite | consensus disorder prediction | 120 | 149 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0269 | Clacu-Chr4:8394247 | Clacu11g0214 | Clacu-Chr11:1871019 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0214 | K10638 | - | csv:116401648 | 1247.26 |