Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0214 ATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAGGCAAAGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGTGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCTGACTTGGAGACGATCACTTGCAAAACTTGCGTCACCCCTTGGCATGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCCGAAGATGTTCCCCTTCCTTCGCTAGGCAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAAGAACTTCTCAGCGGAAAGTTGCAATCCGACAAGGATGACCATGATACCAACAAGGAAAAGAAAAAAAAAGGGGATGATGTTTTGGATTTGTTTGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACCACCCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGTGGCGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAACAAAGCGCTACAAGTTAGCTGCGCGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGTATGATGGAGTTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGCTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGACGGTCAATGGAAGTGGAGGAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAATGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGTTTACCAATTACTACGCCTTGTGCCCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTAGGGAAGACATTCTTGAGAGAGAGAAGCACCGGTGGACGGGCTCTTAGATCCCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGGAGCATCTGAGAAGCTGTGTGAAGAAGAAGAGGTAGATGGGGAAGAGGAGAATGAGGATGAAGATGAGGATGAAGGGAAGGGAAAAGATGGAAGCAATGCAAATGTAAGCAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAGGTGGATGATTTGGAATGA 2028 45.56 MMEEDAKEQPKATELQAKKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPSLGNHSLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKLQSDKDDHDTNKEKKKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGQWKWRKDPPTSKRPVEALDSNGKRSRIRIRQSHIMSVREKLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRERSTGGRALRSQKNVLTCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDGASEKLCEEEEVDGEEENEDEDEDEGKGKDGSNANVSSSPVETRKRAKVDDLE 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1871019 1877684 - ClG42_11g0021400.10 Clacu11g0214 261091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0214 675 ProSiteProfiles YDG domain profile. 291 439 IPR003105 -
Clacu11g0214 675 Pfam RING-type zinc-finger 534 566 IPR027370 -
Clacu11g0214 675 Pfam Zinc finger, C3HC4 type (RING finger) 163 201 IPR018957 GO:0046872(InterPro)
Clacu11g0214 675 SUPERFAMILY RING/U-box 527 615 - -
Clacu11g0214 675 CDD RING-HC_ORTHRUS_rpt1 159 206 IPR047498 -
Clacu11g0214 675 SMART PHD_3 32 79 IPR001965 -
Clacu11g0214 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 637 IPR013083 -
Clacu11g0214 675 ProSitePatterns Zinc finger PHD-type signature. 33 78 IPR019786 -
Clacu11g0214 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Clacu11g0214 675 ProSiteProfiles Zinc finger RING-type profile. 163 202 IPR001841 -
Clacu11g0214 675 MobiDBLite consensus disorder prediction 1 15 - -
Clacu11g0214 675 MobiDBLite consensus disorder prediction 1 20 - -
Clacu11g0214 675 SUPERFAMILY RING/U-box 154 209 - -
Clacu11g0214 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 20 643 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu11g0214 675 ProSitePatterns Zinc finger RING-type signature. 549 558 IPR017907 -
Clacu11g0214 675 MobiDBLite consensus disorder prediction 620 675 - -
Clacu11g0214 675 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 262 457 - -
Clacu11g0214 675 ProSiteProfiles Zinc finger PHD-type profile. 30 81 IPR019787 -
Clacu11g0214 675 MobiDBLite consensus disorder prediction 625 648 - -
Clacu11g0214 675 MobiDBLite consensus disorder prediction 484 506 - -
Clacu11g0214 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 229 IPR013083 -
Clacu11g0214 675 SMART G9a_1 286 443 IPR003105 -
Clacu11g0214 675 Pfam SAD/SRA domain 293 442 IPR003105 -
Clacu11g0214 675 SMART ring_2 163 201 IPR001841 -
Clacu11g0214 675 SMART ring_2 534 590 IPR001841 -
Clacu11g0214 675 Gene3D - 262 458 IPR036987 -
Clacu11g0214 675 SUPERFAMILY FYVE/PHD zinc finger 25 85 IPR011011 -
Clacu11g0214 675 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 109 230 - -
Clacu11g0214 675 SUPERFAMILY PUA domain-like 265 460 IPR015947 -
Clacu11g0214 675 ProSiteProfiles Zinc finger RING-type profile. 534 590 IPR001841 -
Clacu11g0214 675 MobiDBLite consensus disorder prediction 120 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0269 Clacu-Chr4:8394247 Clacu11g0214 Clacu-Chr11:1871019 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0214 K10638 - csv:116401648 1247.26