Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0221 | ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTCCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGTGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCGAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCACGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGTAGCTCCTCAAGCTCAGGCGGGAAGGCGACGGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCATTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATGGTTTTGGAGGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGATCCAAAAATATCAG | 1921 | 46.12 | MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPSNSSTPPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAATGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGMVLEVKKRRRKTSTDRNRFFKCNKYQCLPTSISDPKIS | 640 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1988366 | 1992167 | - | ClG42_11g0022100.10 | Clacu11g0221 | 261098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0221 | 640 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 34 | 593 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Clacu11g0221 | 640 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 99 | IPR013087 | - | |
Clacu11g0221 | 640 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 152 | 176 | - | - | |
Clacu11g0221 | 640 | SMART | c2h2final6 | 77 | 99 | IPR013087 | - | |
Clacu11g0221 | 640 | SMART | c2h2final6 | 118 | 148 | IPR013087 | - | |
Clacu11g0221 | 640 | SMART | c2h2final6 | 153 | 173 | IPR013087 | - | |
Clacu11g0221 | 640 | Gene3D | Classic Zinc Finger | 56 | 125 | - | - | |
Clacu11g0221 | 640 | FunFam | protein indeterminate-domain 12-like | 56 | 124 | - | - | |
Clacu11g0221 | 640 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 99 | IPR013087 | - | |
Clacu11g0221 | 640 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 114 | 148 | - | - | |
Clacu11g0221 | 640 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 179 | 214 | - | - | |
Clacu11g0221 | 640 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 131 | 210 | - | - | |
Clacu11g0221 | 640 | Pfam | Zinc-finger of C2H2 type | 77 | 99 | IPR013087 | - | |
Clacu11g0221 | 640 | MobiDBLite | consensus disorder prediction | 26 | 41 | - | - | |
Clacu11g0221 | 640 | SUPERFAMILY | beta-beta-alpha zinc fingers | 76 | 173 | IPR036236 | - | |
Clacu11g0221 | 640 | MobiDBLite | consensus disorder prediction | 361 | 404 | - | - | |
Clacu11g0221 | 640 | Gene3D | Classic Zinc Finger | 131 | 210 | - | - | |
Clacu11g0221 | 640 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu11g0221 | Clacu-Chr11:1988366 | Clacu10g2010 | Clacu-Chr10:33578026 | 1.20E-84 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48592 | PF12171 | zf-C2H2_jaz | 4.00E-05 | CL0361 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0221 | K25870 | - | csv:101219959 | 960.288 |