Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0221 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTCCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGTGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCGAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCACGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGTAGCTCCTCAAGCTCAGGCGGGAAGGCGACGGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCATTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATGGTTTTGGAGGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGATCCAAAAATATCAG 1921 46.12 MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPSNSSTPPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAATGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGMVLEVKKRRRKTSTDRNRFFKCNKYQCLPTSISDPKIS 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1988366 1992167 - ClG42_11g0022100.10 Clacu11g0221 261098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0221 640 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 593 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu11g0221 640 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Clacu11g0221 640 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 152 176 - -
Clacu11g0221 640 SMART c2h2final6 77 99 IPR013087 -
Clacu11g0221 640 SMART c2h2final6 118 148 IPR013087 -
Clacu11g0221 640 SMART c2h2final6 153 173 IPR013087 -
Clacu11g0221 640 Gene3D Classic Zinc Finger 56 125 - -
Clacu11g0221 640 FunFam protein indeterminate-domain 12-like 56 124 - -
Clacu11g0221 640 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Clacu11g0221 640 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 114 148 - -
Clacu11g0221 640 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 179 214 - -
Clacu11g0221 640 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Clacu11g0221 640 Pfam Zinc-finger of C2H2 type 77 99 IPR013087 -
Clacu11g0221 640 MobiDBLite consensus disorder prediction 26 41 - -
Clacu11g0221 640 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Clacu11g0221 640 MobiDBLite consensus disorder prediction 361 404 - -
Clacu11g0221 640 Gene3D Classic Zinc Finger 131 210 - -
Clacu11g0221 640 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0221 Clacu-Chr11:1988366 Clacu10g2010 Clacu-Chr10:33578026 1.20E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48592 PF12171 zf-C2H2_jaz 4.00E-05 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0221 K25870 - csv:101219959 960.288