Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0228 ATGTCTTTAACTCCCCTGAGATGGTGGTCATTCGAGTACTTCAAGAGACAAATACATAATGTTGTTGTTGATTTAGAAGTCTCCCGACCTGTTGACTATGGTAATGATTTTAGAGATTTCAAAAATCAATTTCCCAAGGGATATATTAATGTTGAGATGGATGAGCTAGCCATAGACAACCAGGCAATTTATAAGTCGATGACACATAAATCAATGACAGATGACATTGTGATGATACATGAGATGATGACACAAGAGCTAGAGATAAATGAGCCATCGATGACTCAGAATTTGATGGCACACAAGCAACCAACTTATGATAATGATATGACACTTGAGCTGGTGAGCGTGAAGTCAAAGTTGGCCTTAATGAAGTCAGACCTCACGAGCATAAAGTTAGAGTTGGCCACTGTCATGTTAAAGTTGAAGAGTATAACGTCAGTGTTACATTTGTTCTATAAGGAAAAGGTAGTCGAGGTGGAACAAGTGGTTCAACAGAACGCTATTGAAGACCCATCGACCATAAAGAAAAAGGGCATGGATGTTGATGAGCGATCTGCCCTAGCCTTTGTAAAACGCAAGCTTCCTGTAATCTCTCTATCTCTCTCTTTCACGACGGTGATCTCTCTCTCACATTCATCACTCGCCGCCGCCGGCAGCTTCTCTCTCTCTGACGCCACCGCCGCCGGTAATCTCTCTCCCTTTCTCTCACTCATCTCTCAATCGCTCTCTCAACGCAGAGAAATTCAGATTGAGCATCAGCAGGTCCCACGACTAACAGCTGCTTGCTGCATCTCTCTTTCTTCAACTTCTGGCATAATTTTGATGGATGGATTTTGCTTCCCCTTCCCCTTCCAAGCGCTACGTCTGACTGTCGCTCAATCTCCAGAATCGTTCGCAGGCGCAAGTTCTTTCCATCATTCATTTTCGATGCTTCTGTTTAGACCGTTTGCTGATTTTGTTACCTTGGTTGGTGGCAGTGCAGACAAGATGTCTCGGAAGGGTTTGATGGAACAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCGCTCTCGCCAGAGGTTATATCTCGTCAAGCTACCATTAATATTGGTACTATTGGTCATGTGGCACATGGGAAGTCTACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGTTTCAAGAATGAGCTGGAGCGTAACATTACTATTAAGCTGGGGTATGCTAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCTATGTGCTACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCTTGGGTTTGAAAATTGCAGGATGAAACTATTGCGACATGTATCCTTTGTCGACTGCCCAGGTCACGATATTCTCATGGCTACCATGCTTAACGGAGCAGCCATTATGGATGGAGCATTACTTCTGATAGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAGCATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTAGCAATCAATCAGCACGAAGCTATTCAAAAGTTCATTCAGGGAACTGTTGCCGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTGAAGTATAACATTGATGTTGTTTGCGAGTACATAGTTAAAAAGATTCCAATTCCAGAAAGGAATTTTGTCTCGCCTCCTAATATGATCGTGATTCGTTCTTTTGACGTTAACAAACCTGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATACTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGCCCGGGTATTGTTGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCAATATACTCTAGGATTGTTTCTTTGTATGCGGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTCATTGGGGTTGGCACGACCATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGGGAAGTTGGATCACTTCCTGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTTTGCGGCGGCTCCTAGGTGTGAGGACAAAAGGATCAGAAAGGCAGGGAAAAGTATCGAAACTGGCCAAGGGGGAGATTTTAATGTTGAACATAGGATCCATGTCTACGGGAGCTAGAGTACTTGCAGTGAAGAACGATTTAGCAAAGTTGCAGCTTACATCTCCTGTTTGCACCAGCAAAGGGGAGAAGATTGCTCTAAGTCGTCGAGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAACGACTCTCGATGTCCCTCCCTGCCCCATTTGA 2385 43.9 MSLTPLRWWSFEYFKRQIHNVVVDLEVSRPVDYGNDFRDFKNQFPKGYINVEMDELAIDNQAIYKSMTHKSMTDDIVMIHEMMTQELEINEPSMTQNLMAHKQPTYDNDMTLELVSVKSKLALMKSDLTSIKLELATVMLKLKSITSVLHLFYKEKVVEVEQVVQQNAIEDPSTIKKKGMDVDERSALAFVKRKLPVISLSLSFTTVISLSHSSLAAAGSFSLSDATAAGNLSPFLSLISQSLSQRREIQIEHQQVPRLTAACCISLSSTSGIILMDGFCFPFPFQALRLTVAQSPESFAGASSFHHSFSMLLFRPFADFVTLVGGSADKMSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMCYKAYGSGKEDSPLCDVLGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2054803 2062995 - ClG42_11g0022800.10 Clacu11g0228 261105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0228 794 FunFam Eukaryotic translation initiation factor 2 subunit gamma 687 786 - -
Clacu11g0228 794 Gene3D Translation factors 572 686 - -
Clacu11g0228 794 Pfam Elongation factor Tu domain 2 598 680 IPR004161 GO:0005525(InterPro)
Clacu11g0228 794 CDD eIF2_gamma_II 571 684 IPR044127 GO:0000049(InterPro)
Clacu11g0228 794 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 334 789 IPR050543 GO:0000049(PANTHER)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005850(PANTHER)
Clacu11g0228 794 FunFam Eukaryotic translation initiation factor 2 subunit gamma 571 686 - -
Clacu11g0228 794 FunFam Eukaryotic translation initiation factor 2 subunit gamma 360 570 - -
Clacu11g0228 794 PRINTS GTP-binding elongation factor signature 469 480 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g0228 794 PRINTS GTP-binding elongation factor signature 453 463 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g0228 794 PRINTS GTP-binding elongation factor signature 364 377 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g0228 794 PRINTS GTP-binding elongation factor signature 507 516 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g0228 794 CDD eIF2_gamma_III 687 781 IPR015256 -
Clacu11g0228 794 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 685 782 IPR009001 -
Clacu11g0228 794 CDD eIF2_gamma 363 570 IPR044128 GO:0005525(InterPro)
Clacu11g0228 794 Gene3D Translation factors 687 786 - -
Clacu11g0228 794 Pfam Initiation factor eIF2 gamma, C terminal 692 781 IPR015256 -
Clacu11g0228 794 SUPERFAMILY Translation proteins 570 684 IPR009000 -
Clacu11g0228 794 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 360 569 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu11g0228 794 Gene3D - 360 570 IPR027417 -
Clacu11g0228 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 572 IPR027417 -
Clacu11g0228 794 Pfam Elongation factor Tu GTP binding domain 362 566 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0666 Clacu-Chr9:5789924 Clacu11g0228 Clacu-Chr11:2054803 8.10E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0228 K03242 - csv:116403970 912.909