Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0235 ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCAGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTAGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAATATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGACACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGTAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCAGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTTAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGCGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAGAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGGCAGCCGCCGCCGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAATGCTGATCCCAGAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA 3432 41.38 MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNQFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGRIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGNIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRHFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTVMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFRAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKGSRRRWVISIQGFSAMAPKADSTKNADPRAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2115426 2123955 - ClG42_11g0023500.10 Clacu11g0235 261112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0235 1143 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524(InterPro)
Clacu11g0235 1143 SMART serkin_6 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0235 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g0235 1143 Pfam Protein kinase domain 703 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0235 1143 Gene3D Transferase(Phosphotransferase) domain 1 778 984 - -
Clacu11g0235 1143 FunFam Leucine-rich repeat receptor-like protein kinase 778 982 - -
Clacu11g0235 1143 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 Pfam Leucine Rich Repeat 214 233 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 Pfam Leucine rich repeat 69 127 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Clacu11g0235 1143 Gene3D - 1024 1143 IPR012677 -
Clacu11g0235 1143 PRINTS Leucine-rich repeat signature 70 83 - -
Clacu11g0235 1143 PRINTS Leucine-rich repeat signature 538 551 - -
Clacu11g0235 1143 FunFam 60S ribosomal protein L23a 1024 1143 - -
Clacu11g0235 1143 ProSiteProfiles Protein kinase domain profile. 702 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g0235 1143 ProSitePatterns Ribosomal protein L23 signature. 1121 1136 IPR001014 GO:0019843(InterPro)
Clacu11g0235 1143 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1061 1136 IPR012678 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu11g0235 1143 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515(InterPro)
Clacu11g0235 1143 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
Clacu11g0235 1143 SUPERFAMILY RNI-like 141 449 - -
Clacu11g0235 1143 Pfam Ribosomal protein L23 1062 1123 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu11g0235 1143 SUPERFAMILY L domain-like 42 133 - -
Clacu11g0235 1143 Gene3D Ribonuclease Inhibitor 3 282 IPR032675 -
Clacu11g0235 1143 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 777 - -
Clacu11g0235 1143 SMART LRR_typ_2 67 91 IPR003591 -
Clacu11g0235 1143 SMART LRR_typ_2 115 139 IPR003591 -
Clacu11g0235 1143 SMART LRR_typ_2 188 211 IPR003591 -
Clacu11g0235 1143 SMART LRR_typ_2 212 235 IPR003591 -
Clacu11g0235 1143 SMART LRR_typ_2 538 561 IPR003591 -
Clacu11g0235 1143 SMART LRR_typ_2 284 308 IPR003591 -
Clacu11g0235 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 277 - -
Clacu11g0235 1143 Hamap Large ribosomal subunit protein uL23 [rplW]. 1063 1143 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu11g0235 1143 FunFam Tyrosine-sulfated glycopeptide receptor 1 281 610 - -
Clacu11g0235 1143 Gene3D Ribonuclease Inhibitor 283 611 IPR032675 -
Clacu11g0235 1143 Pfam Ribosomal protein L23, N-terminal domain 1004 1052 IPR005633 -
Clacu11g0235 1143 PANTHER RECEPTOR-LIKE PROTEIN 55 354 972 - -
Clacu11g0235 1143 SUPERFAMILY L domain-like 484 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0707 Clacu-Chr1:7719955 Clacu11g0235 Clacu-Chr11:2115426 5.90E-35 dispersed
Clacu05g0938 Clacu-Chr5:8315376 Clacu11g0235 Clacu-Chr11:2115426 2.60E-81 dispersed
Clacu07g0296 Clacu-Chr7:3285790 Clacu11g0235 Clacu-Chr11:2115426 3.30E-76 dispersed
Clacu08g1035 Clacu-Chr8:20382316 Clacu11g0235 Clacu-Chr11:2115426 5.60E-63 dispersed
Clacu09g0356 Clacu-Chr9:3073141 Clacu11g0235 Clacu-Chr11:2115426 1.10E-138 dispersed
Clacu09g2048 Clacu-Chr9:35324725 Clacu11g0235 Clacu-Chr11:2115426 6.00E-78 dispersed
Clacu11g0235 Clacu-Chr11:2115426 Clacu11g0675 Clacu-Chr11:6517974 5.10E-73 dispersed
Clacu11g0235 Clacu-Chr11:2115426 Clacu05g1087 Clacu-Chr5:9710322 3.30E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73935 PF00069 Pkinase 7.70E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0235 K27625 - csv:116404121 1644.4