Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0235 | ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCAGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTAGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAATATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGACACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGTAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCAGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTTAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGCGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAGAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGGCAGCCGCCGCCGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAATGCTGATCCCAGAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA | 3432 | 41.38 | MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNQFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGRIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGNIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRHFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTVMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFRAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKGSRRRWVISIQGFSAMAPKADSTKNADPRAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII | 1143 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2115426 | 2123955 | - | ClG42_11g0023500.10 | Clacu11g0235 | 261112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0235 | 1143 | ProSitePatterns | Protein kinases ATP-binding region signature. | 708 | 730 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g0235 | 1143 | SMART | serkin_6 | 702 | 973 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0235 | 1143 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 824 | 836 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g0235 | 1143 | Pfam | Protein kinase domain | 703 | 970 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0235 | 1143 | Gene3D | Transferase(Phosphotransferase) domain 1 | 778 | 984 | - | - | |
Clacu11g0235 | 1143 | FunFam | Leucine-rich repeat receptor-like protein kinase | 778 | 982 | - | - | |
Clacu11g0235 | 1143 | Pfam | Leucine Rich Repeat | 409 | 430 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | Pfam | Leucine Rich Repeat | 540 | 562 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | Pfam | Leucine Rich Repeat | 434 | 452 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | Pfam | Leucine Rich Repeat | 214 | 233 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | Pfam | Leucine rich repeat | 285 | 345 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | Pfam | Leucine rich repeat | 69 | 127 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | SUPERFAMILY | Protein kinase-like (PK-like) | 686 | 973 | IPR011009 | - | |
Clacu11g0235 | 1143 | Gene3D | - | 1024 | 1143 | IPR012677 | - | |
Clacu11g0235 | 1143 | PRINTS | Leucine-rich repeat signature | 70 | 83 | - | - | |
Clacu11g0235 | 1143 | PRINTS | Leucine-rich repeat signature | 538 | 551 | - | - | |
Clacu11g0235 | 1143 | FunFam | 60S ribosomal protein L23a | 1024 | 1143 | - | - | |
Clacu11g0235 | 1143 | ProSiteProfiles | Protein kinase domain profile. | 702 | 982 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g0235 | 1143 | ProSitePatterns | Ribosomal protein L23 signature. | 1121 | 1136 | IPR001014 | GO:0019843(InterPro) | |
Clacu11g0235 | 1143 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 1061 | 1136 | IPR012678 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu11g0235 | 1143 | ProSiteProfiles | Leucine-rich repeat profile. | 540 | 561 | IPR001611 | GO:0005515(InterPro) | |
Clacu11g0235 | 1143 | Gene3D | Phosphorylase Kinase; domain 1 | 662 | 777 | - | - | |
Clacu11g0235 | 1143 | SUPERFAMILY | RNI-like | 141 | 449 | - | - | |
Clacu11g0235 | 1143 | Pfam | Ribosomal protein L23 | 1062 | 1123 | IPR013025 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu11g0235 | 1143 | SUPERFAMILY | L domain-like | 42 | 133 | - | - | |
Clacu11g0235 | 1143 | Gene3D | Ribonuclease Inhibitor | 3 | 282 | IPR032675 | - | |
Clacu11g0235 | 1143 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 664 | 777 | - | - | |
Clacu11g0235 | 1143 | SMART | LRR_typ_2 | 67 | 91 | IPR003591 | - | |
Clacu11g0235 | 1143 | SMART | LRR_typ_2 | 115 | 139 | IPR003591 | - | |
Clacu11g0235 | 1143 | SMART | LRR_typ_2 | 188 | 211 | IPR003591 | - | |
Clacu11g0235 | 1143 | SMART | LRR_typ_2 | 212 | 235 | IPR003591 | - | |
Clacu11g0235 | 1143 | SMART | LRR_typ_2 | 538 | 561 | IPR003591 | - | |
Clacu11g0235 | 1143 | SMART | LRR_typ_2 | 284 | 308 | IPR003591 | - | |
Clacu11g0235 | 1143 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 184 | 277 | - | - | |
Clacu11g0235 | 1143 | Hamap | Large ribosomal subunit protein uL23 [rplW]. | 1063 | 1143 | IPR013025 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu11g0235 | 1143 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 281 | 610 | - | - | |
Clacu11g0235 | 1143 | Gene3D | Ribonuclease Inhibitor | 283 | 611 | IPR032675 | - | |
Clacu11g0235 | 1143 | Pfam | Ribosomal protein L23, N-terminal domain | 1004 | 1052 | IPR005633 | - | |
Clacu11g0235 | 1143 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 354 | 972 | - | - | |
Clacu11g0235 | 1143 | SUPERFAMILY | L domain-like | 484 | 599 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0707 | Clacu-Chr1:7719955 | Clacu11g0235 | Clacu-Chr11:2115426 | 5.90E-35 | dispersed | |
Clacu05g0938 | Clacu-Chr5:8315376 | Clacu11g0235 | Clacu-Chr11:2115426 | 2.60E-81 | dispersed | |
Clacu07g0296 | Clacu-Chr7:3285790 | Clacu11g0235 | Clacu-Chr11:2115426 | 3.30E-76 | dispersed | |
Clacu08g1035 | Clacu-Chr8:20382316 | Clacu11g0235 | Clacu-Chr11:2115426 | 5.60E-63 | dispersed | |
Clacu09g0356 | Clacu-Chr9:3073141 | Clacu11g0235 | Clacu-Chr11:2115426 | 1.10E-138 | dispersed | |
Clacu09g2048 | Clacu-Chr9:35324725 | Clacu11g0235 | Clacu-Chr11:2115426 | 6.00E-78 | dispersed | |
Clacu11g0235 | Clacu-Chr11:2115426 | Clacu11g0675 | Clacu-Chr11:6517974 | 5.10E-73 | dispersed | |
Clacu11g0235 | Clacu-Chr11:2115426 | Clacu05g1087 | Clacu-Chr5:9710322 | 3.30E-144 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73935 | PF00069 | Pkinase | 7.70E-46 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0235 | K27625 | - | csv:116404121 | 1644.4 |