Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0236 ATGTCTCGACCAGTTATTGTTGCATTCACGTTGTTGCTTTTGGGTTTAGCATGCAATGCCCAACTTTCTTCTTCGTTTTACGACCAAACTTGTCCCTCTGCACTCACCACTATTAGAACAGTTATTAGGCAAGCGATCTCTCAAGAACGTCGTATGGCTGCGTCTCTCATTCGCCTCCATTTCCATGATTGTTTTGTTCAGGGATGCGATGCATCGATATTGCTTGATGATACTCCCTCGATGATTGGCGAACAAAATGCAGCACCCAACATAAATTCTGCTAGGGGTTACGGAGTGATACACAAGGCCAAGACTGAAGTTGAGAAGATATGTCCTGGTGTGGTATCTTGTGCAGATGTTCTTGCTATAGCTGCAAGAGATGCTTCTTTTACTGTTGGTGGTCCATCTTGGACAGTAAGACTTGGAAGAAGAGACTCTACCACTGCAAGCAAAGCTCTAGCGGAGAGTGAGCTTCCACATTTCCAAGAAAGTCTTGATAGGCTAATTTCCATTTTTGCAAATAAAGGACTTAGTACAAGAGATATGGTTGCATTGTCAGGTTCTCATACTATAGGACAAGCTCAATGCTTTCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCTAGCACACGCCGTAGAAATTGTCCAACATCAGGTGGAAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTACTTCAAAAATCTTGTTCAAAGAAAGGGTTTGCTAGAAACAGATCAAGTTCTCTTTAATGGAGGATCAACAGATAATATTGTTACAGAGTACAGTAGAGATCCAACTGCATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATTCAACCTCTCACTGGTTCAGAAGGACAGATAAGAAACATATGTGGTGTTGTTAACTAA 945 40.85 MSRPVIVAFTLLLLGLACNAQLSSSFYDQTCPSALTTIRTVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKICPGVVSCADVLAIAARDASFTVGGPSWTVRLGRRDSTTASKALAESELPHFQESLDRLISIFANKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQSNIDAGFASTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIVTEYSRDPTAFKSDFAAAMIKMGDIQPLTGSEGQIRNICGVVN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2127974 2129107 + ClG42_11g0023600.10 Clacu11g0236 261113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0236 314 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 PANTHER PEROXIDASE 72-RELATED 11 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
Clacu11g0236 314 Gene3D Peroxidase, domain 2 159 293 - -
Clacu11g0236 314 FunFam Peroxidase 25 174 - -
Clacu11g0236 314 CDD secretory_peroxidase 21 313 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu11g0236 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Clacu11g0236 314 ProSiteProfiles Plant heme peroxidase family profile. 21 314 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Clacu11g0236 314 FunFam Peroxidase 159 293 - -
Clacu11g0236 314 Gene3D - 26 310 - -
Clacu11g0236 314 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu11g0236 314 Pfam Peroxidase 38 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1964 Clacu-Chr2:33162974 Clacu11g0236 Clacu-Chr11:2127974 1.30E-61 dispersed
Clacu03g0025 Clacu-Chr3:459239 Clacu11g0236 Clacu-Chr11:2127974 8.10E-53 dispersed
Clacu07g1733 Clacu-Chr7:32035101 Clacu11g0236 Clacu-Chr11:2127974 1.40E-71 dispersed
Clacu09g1794 Clacu-Chr9:32556546 Clacu11g0236 Clacu-Chr11:2127974 1.10E-71 dispersed
Clacu11g0210 Clacu-Chr11:1812406 Clacu11g0236 Clacu-Chr11:2127974 4.20E-158 dispersed
Clacu11g0236 Clacu-Chr11:2127974 Clacu11g0725 Clacu-Chr11:7114727 3.20E-94 dispersed
Clacu11g0236 Clacu-Chr11:2127974 Clacu11g0237 Clacu-Chr11:2133028 2.40E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0236 K00430 - csv:116403992 574.318