Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0239 ATGCCCATTTCAAGGCTTTGCCTATTTCTCGCCTTCTTTCCGCTGTTTCTTTCACCCCTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGATGACCGGAGCTTCCTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCCTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCTTCTACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCCCCTCCTTTGACGGCGCTCCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAACCTACTTCTTCTTCCCAACACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTTCTCGTTGCTCTGTACTTATACTTTCGAAAGCGGAACCGACAAATCTCTGCTACCGATAAGGCCTCGAGAACTGATAATCTCCGGCTGTATCCGCCGGATATTGACACTTCTGATGGAGTTCACAAACACAGAACCTCCTCCACCACCAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCCGAAGATTATCAGAGGAATGTTGATAGTAATGACAACGATGATGACGAAGAAGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGGAGTAATAGAAGATTGAGCCCTGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCTAGTTTGAATTCTGGTTCTCCCTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGTTTGAGATCGAAGTCGCCTGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCACTGCCAACACTTCCGGTACCGCCATCACCGTCGTTGTCCTCTGCTTCTTCACCAATGGGAGGTTCAGGGAACACCAAGAACTCGCCGTCGAGAGATTCCGATTTGTCAGAGCTGCATCGGCAGTGTTCAAATGGTTTTAGGATGGATTACCAGCAACCATTACCGGTAAAACTACCACCACCCCGGCCACCACCACCGCCACCACCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACCGTGCCATCGAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCCGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCCTTGCATTGGGACAAAGTTCGGACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAGTCTGATGAGCAAGGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGCACTGAACTGCTAGAAAGTTTACTAAAAATGGCGCCGACCGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGATGATTCACCTTTTAAACTTGGGCCAGCTGAGAAATTCCTCAAGGTAGTTCTCGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCTAATTTCGAATCTGAGGTTGAGTACCTCAATCGGTCCTTCGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACCGGGAACCGGATGAATGTAGGCACGAACCGAGGCGATGCACATGCTTTTAAACTCGACACCCTTCTGAAGCTTGTCGATATCAAGGGCACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCTCAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGACGTCGAGTTTCGGAAGCTTGGTCTTCAAGTTGTTTCAGGTCTTAGTAGGGAGCTATCCAATGTGAAGAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGATGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAAATGAAGACATGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGACTCCATGAACAGGTTCTTGGGGAGGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCAAAGAGGGCATTATCCTCTCCATGGTAAAGGAAATAACCGAATACTTTCATGGAAACTTAGCGAAAGAAGAAGCTCGGCCGCTGCGTATATTCATGGTGGTAAAGGATTTTCTTGCAATCTTAGATCAGGTATGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTCCAAATCCATGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGGTTCCTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2862 47.24 MPISRLCLFLAFFPLFLSPLSAAAAAAAAAAADDRSFLLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFLVALYLYFRKRNRQISATDKASRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYQRNVDSNDNDDDEEDRDDEEFFSPRGSSVGGKDNVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSASSPMGGSGNTKNSPSRDSDLSELHRQCSNGFRMDYQQPLPVKLPPPRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAHMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSSLMSKENGSVRQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFESEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDLNLTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNDVGKLAGGITKITEVIRLNEDMSKGGSKSNFSDSMNRFLGRAAEEVARVQVKEGIILSMVKEITEYFHGNLAKEEARPLRIFMVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPPNPCLPSIFPGLCESQRYGSSDDDSSSSSS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2148295 2152550 - ClG42_11g0023900.10 Clacu11g0239 261116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0239 953 Pfam Formin Homology 2 Domain 493 898 IPR015425 -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 418 442 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 62 90 - -
Clacu11g0239 953 PANTHER FORMIN-RELATED 45 947 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Clacu11g0239 953 MobiDBLite consensus disorder prediction 268 282 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 91 110 - -
Clacu11g0239 953 Coils Coil 660 680 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 371 404 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 62 110 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 324 355 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 422 442 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 222 303 - -
Clacu11g0239 953 Gene3D Formin, FH2 domain 489 908 IPR042201 -
Clacu11g0239 953 ProSiteProfiles Formin homology-2 (FH2) domain profile. 490 924 IPR015425 -
Clacu11g0239 953 SMART it6_source 490 913 IPR015425 -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 381 399 - -
Clacu11g0239 953 SUPERFAMILY Formin homology 2 domain (FH2 domain) 427 911 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1743 Clacu-Chr3:31205771 Clacu11g0239 Clacu-Chr11:2148295 1.80E-105 dispersed
Clacu05g1644 Clacu-Chr5:24451291 Clacu11g0239 Clacu-Chr11:2148295 1.30E-97 dispersed
Clacu07g0232 Clacu-Chr7:2756530 Clacu11g0239 Clacu-Chr11:2148295 6.40E-166 dispersed
Clacu08g1041 Clacu-Chr8:20438740 Clacu11g0239 Clacu-Chr11:2148295 1.20E-69 dispersed
Clacu11g0239 Clacu-Chr11:2148295 Clacu02g0858 Clacu-Chr2:10289006 2.90E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0239 K28090 - csv:101213912 1361.28