Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0239 ATGCCCATTTCAAGGCTTTGCCTATTTCTCGCCTTCTTTCCGCTGTTTCTTTCACCCCTTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGATGACCGGAGCTTCCTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCCTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCTTCTACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCCCCTCCTTTGACGGCGCTCCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAACCTACTTCTTCTTCCCAACACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTTCTCGTTGCTCTGTACTTATACTTTCGAAAGCGGAACCGACAAATCTCTGCTACCGATAAGGCCTCGAGAACTGATAATCTCCGGCTGTATCCGCCGGATATTGACACTTCTGATGGAGTTCACAAACACAGAACCTCCTCCACCACCAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCCGAAGATTATCAGAGGAATGTTGATAGTAATGACAACGATGATGACGAAGAAGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGGAGTAATAGAAGATTGAGCCCTGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCTAGTTTGAATTCTGGTTCTCCCTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGTTTGAGATCGAAGTCGCCTGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCACTGCCAACACTTCCGGTACCGCCATCACCGTCGTTGTCCTCTGCTTCTTCACCAATGGGAGGTTCAGGGAACACCAAGAACTCGCCGTCGAGAGATTCCGATTTGTCAGAGCTGCATCGGCAGTGTTCAAATGGTTTTAGGATGGATTACCAGCAACCATTACCGGTAAAACTACCACCACCCCGGCCACCACCACCGCCACCACCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACCGTGCCATCGAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCCGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCCTTGCATTGGGACAAAGTTCGGACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAGTCTGATGAGCAAGGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGCACTGAACTGCTAGAAAGTTTACTAAAAATGGCGCCGACCGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGATGATTCACCTTTTAAACTTGGGCCAGCTGAGAAATTCCTCAAGGTAGTTCTCGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCTAATTTCGAATCTGAGGTTGAGTACCTCAATCGGTCCTTCGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACCGGGAACCGGATGAATGTAGGCACGAACCGAGGCGATGCACATGCTTTTAAACTCGACACCCTTCTGAAGCTTGTCGATATCAAGGGCACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCTCAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGACGTCGAGTTTCGGAAGCTTGGTCTTCAAGTTGTTTCAGGTCTTAGTAGGGAGCTATCCAATGTGAAGAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGATGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAAATGAAGACATGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGACTCCATGAACAGGTTCTTGGGGAGGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCAAAGAGGGCATTATCCTCTCCATGGTAAAGGAAATAACCGAATACTTTCATGGAAACTTAGCGAAAGAAGAAGCTCGGCCGCTGCGTATATTCATGGTGGTAAAGGATTTTCTTGCAATCTTAGATCAGGTATGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTCCAAATCCATGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGGTTCCTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2862 47.24 MPISRLCLFLAFFPLFLSPLSAAAAAAAAAAADDRSFLLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFLVALYLYFRKRNRQISATDKASRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYQRNVDSNDNDDDEEDRDDEEFFSPRGSSVGGKDNVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSASSPMGGSGNTKNSPSRDSDLSELHRQCSNGFRMDYQQPLPVKLPPPRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAHMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSSLMSKENGSVRQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFESEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDLNLTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNDVGKLAGGITKITEVIRLNEDMSKGGSKSNFSDSMNRFLGRAAEEVARVQVKEGIILSMVKEITEYFHGNLAKEEARPLRIFMVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPPNPCLPSIFPGLCESQRYGSSDDDSSSSSS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2148295 2152550 - ClG42_11g0023900.10 Clacu11g0239 261116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0239 953 Pfam Formin Homology 2 Domain 493 898 IPR015425 -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 418 442 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 62 90 - -
Clacu11g0239 953 PANTHER FORMIN-RELATED 45 947 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Clacu11g0239 953 MobiDBLite consensus disorder prediction 268 282 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 91 110 - -
Clacu11g0239 953 Coils Coil 660 680 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 371 404 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 62 110 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 324 355 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 422 442 - -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 222 303 - -
Clacu11g0239 953 Gene3D Formin, FH2 domain 489 908 IPR042201 -
Clacu11g0239 953 ProSiteProfiles Formin homology-2 (FH2) domain profile. 490 924 IPR015425 -
Clacu11g0239 953 SMART it6_source 490 913 IPR015425 -
Clacu11g0239 953 MobiDBLite consensus disorder prediction 381 399 - -
Clacu11g0239 953 SUPERFAMILY Formin homology 2 domain (FH2 domain) 427 911 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0239 K28090 - - csv:101213912 1361.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1743 Clacu-Chr3:31205771 Clacu11g0239 Clacu-Chr11:2148295 1.80E-105 dispersed
Clacu05g1644 Clacu-Chr5:24451291 Clacu11g0239 Clacu-Chr11:2148295 1.30E-97 dispersed
Clacu07g0232 Clacu-Chr7:2756530 Clacu11g0239 Clacu-Chr11:2148295 6.40E-166 dispersed
Clacu08g1041 Clacu-Chr8:20438740 Clacu11g0239 Clacu-Chr11:2148295 1.20E-69 dispersed
Clacu11g0239 Clacu-Chr11:2148295 Clacu02g0858 Clacu-Chr2:10289006 2.90E-98 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g0232 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.6e-190 662.5
Clacu11g0239 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.1e-166 583.6
Clacu02g1252 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.2e-142 501.9
Clacu03g1743 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Clacu07g0232 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Clacu02g1252 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Clacu02g0858 . 283 595 FH2 protein (formin) Gene Family AT4G15200 54.1 3.5e-52 203.0
Clacu05g1644 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.9 1.3e-46 184.5
Clacu05g1644 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 68.9 2.8e-167 586.3
Clacu02g0858 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Clacu07g0232 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.1e-102 369.0
Clacu02g1252 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Clacu07g0232 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.8e-136 481.5
Clacu11g0239 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Clacu03g1743 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Clacu05g2694 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.3e-126 448.7
Clacu07g0232 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 9.8e-100 361.7
Clacu02g1252 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Clacu02g1252 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Clacu05g1644 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.1e-106 382.5
Clacu07g0225 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Clacu07g0225 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1225.3
Clacu06g1324 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Clacu06g1702 . 1398 1719 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Clacu04g1265 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Clacu06g1324 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Clacu07g0225 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.4e-108 389.8
Clacu05g1785 . 1087 1445 FH2 protein (formin) Gene Family AT5G07650 55.4 4.3e-95 346.3
Clacu06g1702 . 1325 1712 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Clacu04g1265 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Clacu06g1324 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Clacu07g0225 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Clacu05g1785 . 1011 1437 FH2 protein (formin) Gene Family AT5G07770 51.4 5.5e-103 372.1
Clacu05g1785 . 1003 1445 FH2 protein (formin) Gene Family AT3G32400 65.6 1.5e-149 526.6
Clacu06g1324 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Clacu06g1702 . 1325 1719 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Clacu07g0225 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.5e-141 497.3
Clacu04g1265 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Clacu06g1324 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Clacu06g1702 . 1326 1719 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Clacu04g1265 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Clacu07g0225 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.1e-102 367.9
Clacu06g1324 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Clacu06g1702 . 1 1728 FH2 protein (formin) Gene Family AT5G07740 60.3 0.0e+00 1132.9
Clacu06g1702 . 1397 1726 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Clacu04g1265 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Clacu06g1324 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.2e-110 396.0
Clacu07g0225 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
Clacu05g1785 . 1086 1454 FH2 protein (formin) Gene Family AT5G07760 54.0 8.9e-94 342.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012766 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28