Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0252 ATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTTCAATGAGCAAATTGGAAGCAAAAAAGGGGTCACATTCATTCAAGCCAAGAGGGCTTGGCTTCCTAAGTTCCTATTGCTTTGGGTTCTGTTGGTGGCATTCATCAGTATGCTAATCTACAAGGGAATGGATGCTGACAACAAAGTTAGAAGAAAGGAAGTTTTGGGGAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCACTGTCAGTGTCAACCATGTCCATGCTTTAGCCATTCTCATTTCCACTTTCCACTACTCCAAAAACATATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACTGCCAGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGCGTGGCATTTGCGCAAAGAGTGGTGCACTTTGAGCGAGAGAAATTTGAGAAGCAACATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACTGTTTCCTACATCGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGCGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTACTGGGTTCTCATCATCTTGGAGTTGTTTTGACGATCCCTGTTTATAAAACCAAGCTTCCTGCAAATCCAACCATGGATGAACGAACTCGAGCAACGGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCGCTCGTGGAAAATTTACTTGGGCAACTTGCTGGCAATCAGGCCATTTTGGTGAATGTATACGATGTCACAAACTACTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTTACATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACAGCACTTACTACCGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCCTATATGGTGCAGCAACTCATATTGTTAAAGTTGAGGATGATTTCAATGAAATGCAAGAACTGAAAGGTCTAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTCGCCACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTTGACACTGAACTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCCCAGGCCTGTGGAAAAGCACTGATAGCATTGATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTCGTTTCTGACAAAGTTCCTGAAATTGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTCGTGGGTAACTCTGTGAAATTCACAGAACAAGGACATATATTTGTCAAAGTTCAATTAGCCGAACAATCAATGACCTCTACGAATATCAAATCTGAAACTCACGTGAATGGAAACTTAGAGGATGGTGCATCCAACAATAAACATCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTCCAACCGAACGGTTCAAGCAATCTCATGGCTACAAATGAAAGTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACTGGAATTGGGATTCCGTTATGCGCTCAAGGTCGAGTTTTTATGCCGTTTATGCAAGCAGATAGCTCAACCTCCAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTTTGGTTGAGCTAATGGGCGGCCAGATTAACTTTGTAAGCCGGCCTCAGGTTGGAAGCACGTTCTCATTCACTGCTGTATTTGGGAGATGTGAGAAGAAAGCGACAGTTGACATCAAAAAGTCTAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCTGTCGTAGTCGATGGGAAACCAGTTAGAGCTGCTGTTACCAAATACCATTTGAAGAGACTTGGCATCCTGGTTGAAGTTGCCAGCAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGATCAGTTAGATCAAGTAATATACTTCAGCCTGACGTAATTCTTCTCGAGAAAGATATCTTTATTTCAAACGAGGAATGTGGTTCTTCTAATTTGCTTCATCAATTAGACTGGAAGCAGAATGGTCATACCTTAAAATTGCCAAAATTGATCCTTCTTGCAACTAGCATGAGCACGGTGGAATTTGATAAAGCGAAGGAAGTGGGTTTCTCTGACACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGACAGCTTGGGAAGGACATGGCTAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTCGTTGATGACAATAGGGTAAACCGAAGAGTTGCTGCAGGTGCTTTGAAGAAATTTGGTGCCGATGTAGAGTGTGTCGACAGTGGGAAAGCTGCACTGGCATTGCTTCAATTGCCACACACTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGCGACCCGAAGAATCAGGCTGATGGAGAGCAAGGAAAATGAGGTACTGATTAGGGAATCTGATGGCAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCAATGACCGCAGATGTAATTCACGCAACATACGACGAGTGCCTAAAATGTGGGATGGACGGATACGTATCGAAGCCATTTGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTTTTCAAATCAAAGCCCATCACCGATTCATGA 3015 42.82 MSMKMQQSHHSVAVRFNEQIGSKKGVTFIQAKRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFTVSVNHVHALAILISTFHYSKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFNEMQELKGLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMTSTNIKSETHVNGNLEDGASNNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNESSDIVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGRCEKKATVDIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHTLKLPKLILLATSMSTVEFDKAKEVGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNRVNRRVAAGALKKFGADVECVDSGKAALALLQLPHTFDACFMDIQMPEMDGFEATRRIRLMESKENEVLIRESDGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSKPITDS 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2280269 2287725 - ClG42_11g0025200.10 Clacu11g0252 261129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0252 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Clacu11g0252 1004 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu11g0252 1004 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu11g0252 1004 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu11g0252 1004 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu11g0252 1004 SMART REC_2 859 992 IPR001789 GO:0000160(InterPro)
Clacu11g0252 1004 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu11g0252 1004 ProSiteProfiles Response regulatory domain profile. 700 833 IPR001789 GO:0000160(InterPro)
Clacu11g0252 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 996 IPR050956 -
Clacu11g0252 1004 FunFam Histidine kinase 3 854 1000 - -
Clacu11g0252 1004 SMART CHASE_2 107 292 IPR006189 -
Clacu11g0252 1004 SUPERFAMILY CheY-like 696 834 IPR011006 -
Clacu11g0252 1004 Gene3D - 694 837 - -
Clacu11g0252 1004 Gene3D - 855 1003 - -
Clacu11g0252 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 598 670 IPR003594 -
Clacu11g0252 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu11g0252 1004 FunFam Histidine kinase 4 111 326 - -
Clacu11g0252 1004 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu11g0252 1004 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Clacu11g0252 1004 FunFam Histidine kinase 4 352 443 - -
Clacu11g0252 1004 CDD REC_hyHK_CKI1_RcsC-like 861 992 - -
Clacu11g0252 1004 Pfam CHASE domain 110 290 IPR006189 -
Clacu11g0252 1004 ProSiteProfiles Response regulatory domain profile. 860 996 IPR001789 GO:0000160(InterPro)
Clacu11g0252 1004 Gene3D - 444 678 IPR036890 -
Clacu11g0252 1004 SMART HKATPase_4 492 675 IPR003594 -
Clacu11g0252 1004 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu11g0252 1004 SUPERFAMILY CheY-like 858 996 IPR011006 -
Clacu11g0252 1004 Gene3D CHASE domain 111 326 IPR042240 -
Clacu11g0252 1004 Pfam Response regulator receiver domain 861 992 IPR001789 GO:0000160(InterPro)
Clacu11g0252 1004 Gene3D - 353 443 - -
Clacu11g0252 1004 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Clacu11g0252 1004 Coils Coil 430 450 - -
Clacu11g0252 1004 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Clacu11g0252 1004 Gene3D - 58 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0671 Clacu-Chr1:7221363 Clacu11g0252 Clacu-Chr11:2280269 0.00E+00 dispersed
Clacu05g1754 Clacu-Chr5:26562297 Clacu11g0252 Clacu-Chr11:2280269 9.10E-50 dispersed
Clacu06g0219 Clacu-Chr6:2518324 Clacu11g0252 Clacu-Chr11:2280269 7.90E-278 dispersed
Clacu10g0060 Clacu-Chr10:968310 Clacu11g0252 Clacu-Chr11:2280269 3.00E-42 dispersed
Clacu11g0252 Clacu-Chr11:2280269 Clacu11g1205 Clacu-Chr11:19154886 7.80E-09 dispersed
Clacu11g0252 Clacu-Chr11:2280269 Clacu02g0278 Clacu-Chr2:2520926 2.60E-278 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48594 PF02518 HATPase_c 2.10E-31 CL0025 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0252 K14489 - csv:101204531 1893.63