Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0272 ATGGAGGACGAGGAGCATAATGGGAATGGGAGTAGCCGGTTGGCGCCGCCGCGGGGTCCAGCGGAGCACTGTGTGGAAATTGTTCATCCGGTGGTTCCGCCGCCGAGGAGAAGCTGGATACAGAAGCTGCGCAACCGGCTGAAGGAAATATTTTTTCCGGACGATCCTCTCCGGCAGTTCAAAGGGCAGTCTCCGGCGAGGAAATGGGTGATTGGAGGTCAATATATATTCCCAATTCTTCAATGGGGGCCTCACTATAATCTTAGCCTTTTTAAATCTGATGTTGTTGCTGGTCTCACCATTGCTAGCTTGGCCATACCTCAGGGTATTAGCTATGCTAAGCTTGCCAATTTGCCTCCCATTGTTGGACTTTATTCAAGCTTTGTTCCACCACTAGTATATGCTGTTCTTGGAAGCTCAAGAGATCTAGCAGTTGGACCTGTTTCAATAGCATCACTAATATTGGGTTCCATGCTGAGACAACAAGTTTCTCCCATCAAAGATCCCATTCTTTTTCTTCAGCTTGGCTTCACTTCTACCTTCTTCGCGGGTCTCTTTCAAGCTTCGCTCGGGTTTCTCAGACTTGGTTTTATAATAGATTTTTTATCGAAGGCGACTTTGATTGGATTCATGGCAGGAGCAGCCATTATTGTGTCTTTGCAACAACTTAAAGGGTTGCTTGGAATAACCCATTTCACTAAACAGATGGGTTTGATTCCTGTTTTGTCCTCAGTTTTTCATCACACTCATGAGTGGTCATGGCAGACTATACTGATGGGCTTTTGTTTCCTTCTCTTTCTTCTCCTCACAAGGCACATTAGCATGAAAAAGCCAAAATTGTTCTGGGTGTCAGCTGGAGCTCCTTTGGTGTCCGTCATTCTTTCAACCATTTTGGTCTTTGCATTCAAGGCGGATCGTCATGGCATCACCGTTATAGGAAAGTTGCAAGAAGGATTGAACCCACCTTCATGGAATATGCTTCGATTTGAAGGGTCACACCTTGGCCTTGTTATTAAGACTGGACTCGTCACCGGCATCATCTCTCTCACTGAAGGAATCGCAGTAGGGCGAACTTTTGCAGCTATAAAAGACTACCGCGTCGATGGTAACAAGGAAATGATTGCAATCGGCCTCATGAATGTCGTCGGCTCTTTCACTTCTTGCTATATCACAACAGGTGCATTTTCAAGGTCAGCGGTGAACCATAATGCGGGAGCAAAGACCGCAGTGTCGAACATCATAATGTCAGTGACGATAATGGTGACGTTGTTGTTTCTGATGCCTCTGTTTCAGTATACACCCAATCTGGTGTTGGCTGCCATCATCGTCACCGCCGTCGTCGGCCTTATCGACATCCCGGCTGCCTATGGCATTTGGAAGGTCGACAAGTTCGATTTCGTTGTGATGCTTTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAACATGGCCTCGCCATTGCTGTTGGCATATCAATTTTCAAGATCATCCTACAAATCACAAGGCCAAAAACAGTGATGTTGGGGAACATAGCTGGAACAGATATATATAGAAACCTTCACCATTACAAGGATGCAATGAGTGTCAAAGGCTTTCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCCAACACCACATATCTCAATGAAAGGATTTTGAGATGGATCGAAGATTATGAAGCTGATCAAGATCATATTAAGAAGGAGGACTCCAGCCTTCAGTTTGTTGTTTTAGAATTGTCAGCTGTGAGTGCTATAGACACTAGTGGAGTTTTACTCTTCAAAGACCTAAGGAGAGCATTGGAAAAGAAGGGTGTTGAGCTAGTGTTGGTGAACCCATTGGGTGAAGTTTTGGAAAAGTTGCAAAAGGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTATTCTTGACTGTGGGAGAGGCCATTGCTTCACTAGCAACAACAATGAAGGGACAATCCTCAACTATATAG 1980 44.8 MEDEEHNGNGSSRLAPPRGPAEHCVEIVHPVVPPPRRSWIQKLRNRLKEIFFPDDPLRQFKGQSPARKWVIGGQYIFPILQWGPHYNLSLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQQVSPIKDPILFLQLGFTSTFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLIPVLSSVFHHTHEWSWQTILMGFCFLLFLLLTRHISMKKPKLFWVSAGAPLVSVILSTILVFAFKADRHGITVIGKLQEGLNPPSWNMLRFEGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYITTGAFSRSAVNHNAGAKTAVSNIIMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDIPAAYGIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVMLGNIAGTDIYRNLHHYKDAMSVKGFLILSIEAPINFANTTYLNERILRWIEDYEADQDHIKKEDSSLQFVVLELSAVSAIDTSGVLLFKDLRRALEKKGVELVLVNPLGEVLEKLQKADENQEILRPNNVFLTVGEAIASLATTMKGQSSTI 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2458052 2469323 - ClG42_11g0027200.10 Clacu11g0272 261149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0272 659 CDD STAS_SulP_like_sulfate_transporter 523 641 - -
Clacu11g0272 659 ProSiteProfiles STAS domain profile. 522 648 IPR002645 -
Clacu11g0272 659 FunFam Sulfate transporter 31 502 651 - -
Clacu11g0272 659 PANTHER SULFATE TRANSPORTER 52 646 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu11g0272 659 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020(InterPro)
Clacu11g0272 659 SUPERFAMILY SpoIIaa-like 528 648 IPR036513 -
Clacu11g0272 659 Pfam STAS domain 526 644 IPR002645 -
Clacu11g0272 659 NCBIfam sulfate permease 78 643 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu11g0272 659 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Clacu11g0272 659 Gene3D STAS domain 502 651 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0726 Clacu-Chr9:6321830 Clacu11g0272 Clacu-Chr11:2458052 1.10E-208 dispersed
Clacu09g1592 Clacu-Chr9:27444859 Clacu11g0272 Clacu-Chr11:2458052 7.00E-176 dispersed
Clacu09g2047 Clacu-Chr9:35300322 Clacu11g0272 Clacu-Chr11:2458052 4.50E-92 dispersed
Clacu11g0272 Clacu-Chr11:2458052 Clacu11g1713 Clacu-Chr11:28382739 2.30E-187 dispersed
Clacu11g0272 Clacu-Chr11:2458052 Clacu09g0220 Clacu-Chr9:2009749 2.20E-230 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0272 K17471 - csv:101219163 1183.7